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学者姓名：张重义
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Abstract ：
The timing of transplanting and topping significantly affects transcriptional expression, thereby influencing the metabolic and developmental processes of tobacco. The glycolysis pathway plays a central role in driving internal chemical changes that shape alterations in the tobacco's metabolic pathways. Transcriptome analysis revealed that early transplanting and topping treatments resulted in 4,534 differentially expressed genes. KEGG annotation identified 32 differentially expressed genes associated with glycolysis metabolism. Specifically, the aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3) pathway was significantly upregulated, whereas the fructose-bisphosphate aldolase (EC 4.1.2.13) was significantly downregulated. KEGG-GSEA gene set analysis indicated that early transplanting and topping enhanced expression of gene sets involved in glycolysis metabolism. Additionally, two core enrichment genes, KPYC-l and Gal-l, were identified as being involved in glycolysis metabolism. Across the glycolysis metabolic pathway, enzyme activities were predominantly downregulated before phosphoenolpyruvate and upregulated thereafter. This suggests that tobacco likely enhanced phosphoenolpyruvate production through increased activity in the pentose phosphate pathway and gluconeogenesis. These alterations promoted heightened metabolic pathways involving pyruvate, acetate, and acetyl-CoA. A newly identified gene, LOC107803480, belonging to the SCF family, was found to be enriched in glycolysis metabolism according to the KEGG database. This gene contains three conserved motifs: PS00184 (GARS), PS00337 (BETA_LACTAMASE_D), and PS10049 (PSI_RSU). In conclusion, transcriptional analysis and the discovery of novel genes suggest that early transplanting and topping significantly impacts the glycolysis pathway, underscoring its importance in carbohydrate metabolism in tobacco. (c) 2025 SAAB. Published by Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies.
Keyword ：
Glycolysis Glycolysis Tobacco Tobacco Topping Topping Transcriptome Transcriptome Transplanting Transplanting
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| GB/T 7714 | Zhao, Xianbo , Yuan, Feiyue , Chen, Yiqiang et al. Effects of early transplanting and topping on glycolysis in the upper leaves of Nicotiana tabacum [J]. | SOUTH AFRICAN JOURNAL OF BOTANY , 2025 , 178 : 217-225 . |
| MLA | Zhao, Xianbo et al. "Effects of early transplanting and topping on glycolysis in the upper leaves of Nicotiana tabacum" . | SOUTH AFRICAN JOURNAL OF BOTANY 178 (2025) : 217-225 . |
| APA | Zhao, Xianbo , Yuan, Feiyue , Chen, Yiqiang , Zhang, Yiqi , Zhang, Ye , Zhang, Zhuangyi et al. Effects of early transplanting and topping on glycolysis in the upper leaves of Nicotiana tabacum . | SOUTH AFRICAN JOURNAL OF BOTANY , 2025 , 178 , 217-225 . |
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Flavonoids are a major component of Artemisia argyi and play a crucial role in its pharmacological properties. However, the molecular mechanisms underlying flavonoid biosynthesis in A. argyi remain unclear. To address this, transcriptome and quantitative metabolome analyses were conducted across five developmental stages of A. argyi. In total, 85 flavonoid compounds were identified across these different stages. Differentially expressed candidate genes and metabolites involved in flavonoid biosynthesis were also identified. Differentially accumulated flavonoid metabolites (DFMs) were observed among the 10 comparison groups, with 29 DFMs identified from the five developmental stages of A. argyi leaves. The biosynthesis process identified 38 differentially expressed genes (DEGs) from seven gene families. Furthermore, 26 DEGs exhibited a significant correlation with the levels of seven active flavonoid metabolites, as revealed by weighted gene co-expression network analysis. These DEGs included eight HCT genes, six CHI genes, two CHS genes, three CCoAOMT genes, two F3 ' H genes, two C4H genes, two CYP98A genes, and one F3H gene. Based on preliminary analysis, HCT1 may be associated with accumulating hispidulin and jaceosidin. This study investigated the relationship between differential gene expression and flavonoid accumulation using an integrated transcriptomic and metabolomic approach, providing valuable insights into the mechanisms of flavonoid biosynthesis and quality formation in A. argyi.
Keyword ：
Artemisia argyi Artemisia argyi enzyme genes enzyme genes flavonoids flavonoids metabolome metabolome transcriptome transcriptome
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| GB/T 7714 | Miao, Chunyan , Li, Mengzhi , Li, Mingjie et al. Multi-Omics Landscape to Reveal the Discrepancy in the Accumulation of Flavonoids in Artemisia argyi Across Multiple Growth Stages [J]. | PHYSIOLOGIA PLANTARUM , 2025 , 177 (4) . |
| MLA | Miao, Chunyan et al. "Multi-Omics Landscape to Reveal the Discrepancy in the Accumulation of Flavonoids in Artemisia argyi Across Multiple Growth Stages" . | PHYSIOLOGIA PLANTARUM 177 . 4 (2025) . |
| APA | Miao, Chunyan , Li, Mengzhi , Li, Mingjie , Gu, Li , Zhang, Zhongyi , Gao, Li et al. Multi-Omics Landscape to Reveal the Discrepancy in the Accumulation of Flavonoids in Artemisia argyi Across Multiple Growth Stages . | PHYSIOLOGIA PLANTARUM , 2025 , 177 (4) . |
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本发明提供了一种太子参种质鉴别模型的构建方法及太子参种质鉴别方法，属于药材鉴别技术领域。本发明包括以下步骤：采集不同太子参的高光谱图像数据；对采集的太子参高光谱图像数据进行黑白板校正，计算校正高光谱数据的相对反射率；对所述相对反射率数据进行阈值分割，提取目标感兴趣区域，计算感兴趣区域平均光谱值；剔除感兴趣区域平均光谱值的异常数据，获得原始全波段光谱数据；对原始全波段光谱数据进行特征波段筛选，将筛选获得的特征波段与种质信息利用粒子优化算法构建太子参种质鉴别模型。本发明利用高光谱成像技术构建的模型可用于太子参的分类鉴别，分辨率和灵敏度高，重复性好，简便快捷，具有广泛的应用价值。
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| GB/T 7714 | 张婷婷 , 童金鹏 , 古力 et al. 一种太子参种质鉴别模型的构建方法及太子参种质鉴别方法 : CN202510280748.X[P]. | 2025-03-11 . |
| MLA | 张婷婷 et al. "一种太子参种质鉴别模型的构建方法及太子参种质鉴别方法" : CN202510280748.X. | 2025-03-11 . |
| APA | 张婷婷 , 童金鹏 , 古力 , 李明杰 , 张重义 , 王衍坤 et al. 一种太子参种质鉴别模型的构建方法及太子参种质鉴别方法 : CN202510280748.X. | 2025-03-11 . |
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The homeodomain-leucine zipper (HD-Zip) family of transcription factor is a unique and vital gene family in plants, involved in various processes including organ development, stress responses, and regulation of secondary metabolite biosynthesis. This study aimed to investigate the role of HD-Zip family transcription factors in the development of Artemisia argyi trichomes. By utilizing the whole genome data of A. argyi, we identified 69 AaHDZ transcription factors and systematically characterized their structural and physicochemical properties. The predicted amino acid sequence lengths range from 188 to 854 residues, with relative molecular masses of 22.2-94.6 kDa, theoretical isoelectric points of 4.65-9.31, and lipid solubility indices of 52.08-89.14. All of these proteins were hydrophilic. The results of subcellular localization predictions indicated that most AaHDZ proteins are localized in the nucleus, while a few are located in the cytoplasm and chloroplasts. Based on the classification of the HD-Zip family in Arabidopsis thaliana, the 69 AaHDZ proteins were divided into four subfamilies, with similar gene structures observed within each subfamily. Heterologous overexpression of AaHDZ64 gene significantly increased trichome density in A. thaliana. The results confirmed that AaHDZ64 is a positive regulatory factor for the growth and development of trichomes. This study provides a theoretical foundation for understanding the molecular regulatory mechanisms underlying trichome development in A. argyi leaves and offers insights for the precision breeding of A. argyi.
Keyword ：
AaHDZ64 AaHDZ64 Artemisia argyi Artemisia argyi Expression analysis Expression analysis HD-Zip transcription factor HD-Zip transcription factor Trichome development Trichome development
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| GB/T 7714 | Cui, Zhanhu , Miao, Chunyan , Shang, Heyang et al. Genome-wide identification of HD-Zip transcription factor family in Artemisia argyi and functional analysis of AaHDZ64 in trichome development [J]. | PLANT GENE , 2025 , 43 . |
| MLA | Cui, Zhanhu et al. "Genome-wide identification of HD-Zip transcription factor family in Artemisia argyi and functional analysis of AaHDZ64 in trichome development" . | PLANT GENE 43 (2025) . |
| APA | Cui, Zhanhu , Miao, Chunyan , Shang, Heyang , Zhao, Qian , Li, Shujiao , Zhang, Zhongyi et al. Genome-wide identification of HD-Zip transcription factor family in Artemisia argyi and functional analysis of AaHDZ64 in trichome development . | PLANT GENE , 2025 , 43 . |
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Rehmannia chingii (2n = 2x = 28) is an important folk medicinal plant with high therapeutic value, particularly due to its richness in iridoid glycosides. However, research on its evolution and gene functional identification has been hindered by the lack of a high-quality genome. Here, we present the 1.169 Gb telomere-to-telomere (T2T) genome sequence of R. chingii. Phylogenetic analysis confirms that Rehmannia belongs to the Orobanchaceae family. We find that structural genes of the 2-C-methyl-d-erythritol-4-phosphate (MEP) pathway and the iridoid pathway are predominantly expressed in R. chingii leaves. Further analyses reveal a cytochrome P450 gene cluster localized on chromosome 8, and identify RcCYP72H7 within this cluster as an aucubin epoxidase, capable of catalyzing aucubin epoxidation to form catalpol. The genome offers valuable resources for studying iridoid glycoside biosynthesis and the evolutionary history of Rehmannia, and will help to faciliate genetic improvement of R. chingii for pharmaceutical and health-related applications.
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| GB/T 7714 | Wang, Fengqing , Jiang, Zhennan , Gao, Junge et al. Analysis of the Rehmannia chingii geneome identifies RcCYP72H7 as an epoxidase in iridoid glycoside biosynthesis [J]. | NATURE COMMUNICATIONS , 2025 , 16 (1) . |
| MLA | Wang, Fengqing et al. "Analysis of the Rehmannia chingii geneome identifies RcCYP72H7 as an epoxidase in iridoid glycoside biosynthesis" . | NATURE COMMUNICATIONS 16 . 1 (2025) . |
| APA | Wang, Fengqing , Jiang, Zhennan , Gao, Junge , Miao, Chunyan , Song, Ci , Yang, Yahe et al. Analysis of the Rehmannia chingii geneome identifies RcCYP72H7 as an epoxidase in iridoid glycoside biosynthesis . | NATURE COMMUNICATIONS , 2025 , 16 (1) . |
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Under long-term continuous cropping, Achyranthes bidentata sustained higher yield and quality by maintaining a stable microbial community that fosters positive plant-soil feedback and demonstrates ecological resilience. Our study elucidates how long-term monoculture alters microbial communities across the soil-root continuum. Bacterial diversity increased in both the rhizosphere and endosphere, while fungal diversity decreased in the rhizoplane and endosphere, illustrating a pronounced ecological divergence between bacterial and fungal communities. Bacteria exhibited niche expansion, shifting from K-strategists to r-strategists, adopting more competitive resource-acquisition strategies. In contrast, fungi became increasingly resource-specialized: symbiotic taxa dominated root compartments, while pathogenic taxa accumulated in the rhizoplane and endosphere. Community assembly shifted from stochastic processes to environmental filtering, particularly in the endosphere, reflecting intensified selection pressures over time. Network analysis pinpointed keystone taxa, most notably Pseudomonas spp., that may stabilize microbial networks and sustain ecosystem functions under monoculture stress. Soil sterilization decreased A. bidentata biomass accumulation by 43 % and reduced bioactive compounds by 25.71 % (beta-ecdysterone), 28.57 % (25R-inokosterone), and 25 % (25S-inokosterone) (P < 0.05). Exogenous inoculation with the plant growth-promoting rhizobacteria strain Pseudomonas aeruginosa enhanced root fresh weight by 33.88 % compared to the non-inoculated control without significantly altering ecdysteroid profiles. These findings provide valuable insights into microbial adaptations to monoculture, offering strategies for managing soil microbiomes to improve crop resilience and sustainable agroecosystem management.
Keyword ：
Co-occurrence networks Co-occurrence networks Ecological resilience Ecological resilience Life-history strategies Life-history strategies Microbial communities Microbial communities Root-soil continuum Root-soil continuum
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| GB/T 7714 | Liu, Yazhou , Zeng, Chunli , Zhang, Bianhong et al. Microbially mediated ecological resilience in the root-soil continuum underlies Achyranthes bidentata adaptation to continuous cropping [J]. | INDUSTRIAL CROPS AND PRODUCTS , 2025 , 235 . |
| MLA | Liu, Yazhou et al. "Microbially mediated ecological resilience in the root-soil continuum underlies Achyranthes bidentata adaptation to continuous cropping" . | INDUSTRIAL CROPS AND PRODUCTS 235 (2025) . |
| APA | Liu, Yazhou , Zeng, Chunli , Zhang, Bianhong , Zhang, Chenjing , Jiao, Yanyang , Yang, Kaiwen et al. Microbially mediated ecological resilience in the root-soil continuum underlies Achyranthes bidentata adaptation to continuous cropping . | INDUSTRIAL CROPS AND PRODUCTS , 2025 , 235 . |
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BACKGROUND Rehmannia glutinosa, a herb of significant medicinal and food value, is highly susceptible to pathogen infections. Fusarium oxysporum f.sp. R. glutinosa (FORg), a pathogenic strain isolated from R. glutinosa, induces root rot disease, leading to severe yield losses. Currently, resistant cultivars and effective control strategies for R. glutinosa root rot remain very limited. This study aims to investigate the feasibility and potential of SIGS technology in preventing and controlling R. glutinosa root rot caused by FORg.RESULTS This study demonstrates that FORg hyphae can capably take up dsRNA, confirming their suitability for SIGS-based disease control. dsRNA targeting SGE1 and CYP51, synthesized in vivo and extracted through low-cost ethanol method, significantly suppressed the expression of virulence-associated genes in both hyphae and conidia. Root disc assays further validated that exogenous dsRNA effectively attenuated FORg pathogenicity. Combined applications of SGE1 and CYP51S dsRNAs synergistically reduced disease severity compared to single-target treatments. Additionally, dsRNA encapsulated in layered double hydroxide (LDH) prolonged functional durability, with sustained plant protection observed for 15 days post-spraying, outperforming unencapsulated dsRNA.CONCLUSION This finding establishes the feasibility of SIGS for controlling FORg-induced root rot in R. glutinosa and highlights the potential of nanomaterial encapsulation in addressing persistent fungal epidemics in agricultural systems. (c) 2025 Society of Chemical Industry.
Keyword ：
disease controlling disease controlling fungal uptake fungal uptake nanocarriers nanocarriers spray-induced gene silencing spray-induced gene silencing
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| GB/T 7714 | Guo, Bingyang , Yang, Yanhui , Tan, Jiayi et al. NanoClay-enhanced spray-induced gene silencing as a biological control strategy for Rehmannia glutinosa root rot disease [J]. | PEST MANAGEMENT SCIENCE , 2025 . |
| MLA | Guo, Bingyang et al. "NanoClay-enhanced spray-induced gene silencing as a biological control strategy for Rehmannia glutinosa root rot disease" . | PEST MANAGEMENT SCIENCE (2025) . |
| APA | Guo, Bingyang , Yang, Yanhui , Tan, Jiayi , Wang, Rong , Xue, Tianrui , Li, Mingjie et al. NanoClay-enhanced spray-induced gene silencing as a biological control strategy for Rehmannia glutinosa root rot disease . | PEST MANAGEMENT SCIENCE , 2025 . |
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Accurate authentication of Pseudostellaria heterophylla (TZS) is essential for quality control in traditional Chinese medicine (TCM). This study pioneers a non-destructive authentication framework by systematically comparing machine vision and hyperspectral imaging (HSI) across visible-near-infrared and short-wave infrared (SWIR) spectral ranges. Multiple classification algorithms, including support vector machines, partial least squares discriminant analysis, extreme learning machines, and backpropagation neural networks (BPNN), were implemented. Wavelength selection was performed using competitive adaptive reweighted sampling (CARS), successive projections algorithm (SPA), and their hybrid approach, while model parameters were optimized through particle swarm optimization (PSO). Results revealed that the SWIR HSI system achieved 96.4 % classification accuracy using a CARS-SPA-PSO-BPNN model with only 16 effective wavelengths in 13.9 s, accomplishing 95.9 % spectral dimensionality reduction while maintaining optimal performance. Complementary untargeted metabolomic profiling via UHPLC-Q-TOF/MS identified 41 key differential metabolites, including fatty acids, lipids, cyclic peptides, and terpenoids, correlated with the spectral features, mechanistically validating the model's decisions. This work lays the foundation for a streamlined hyperspectral sorting system to detect the authenticity of TZS, advancing TCM standardization and industrialization.
Keyword ：
Hyperspectral imaging Hyperspectral imaging Non-destructive authentication Non-destructive authentication Pseudostellaria heterophylla Pseudostellaria heterophylla TCM quality control TCM quality control UHPLC-Q-TOF/MS UHPLC-Q-TOF/MS
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| GB/T 7714 | Zhang, Tingting , Tong, Jinpeng , Li, Long et al. Integration of SWIR hyperspectral imaging, UHPLC-Q-TOF/MS and optimized machine learning for non-destructive authentication of Pseudostellaria heterophylla [J]. | INDUSTRIAL CROPS AND PRODUCTS , 2025 , 234 . |
| MLA | Zhang, Tingting et al. "Integration of SWIR hyperspectral imaging, UHPLC-Q-TOF/MS and optimized machine learning for non-destructive authentication of Pseudostellaria heterophylla" . | INDUSTRIAL CROPS AND PRODUCTS 234 (2025) . |
| APA | Zhang, Tingting , Tong, Jinpeng , Li, Long , Yuan, Jiduan , Yuan, Xiaotan , Yuan, Feiyue et al. Integration of SWIR hyperspectral imaging, UHPLC-Q-TOF/MS and optimized machine learning for non-destructive authentication of Pseudostellaria heterophylla . | INDUSTRIAL CROPS AND PRODUCTS , 2025 , 234 . |
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The obstacle of continuous cropping poses a key challenge limiting the sustainable and safe production of Chinese herbal medicines, with the dysregulation of plant immune responses being identified as the primary contributing factor. LRR-RLPs, as major members of plant pattern recognition receptors (PRRs), are extensively involved in mediating plant immune responses. However, these receptors remain unidentified in the medicinal plant Rehmannia glutinosa. In this study, we identified 14 RgRLP genes in R. glutinosa through bioinformatics approaches and systematically analyzed their differential expression patternas under potted cultivation versus controlled simulated continuous cropping conditions. Subsequently, we constructed overexpression systems for functional characterization of three pivotal RgRLP genes (RgRLP4, RgRLP10, and RgRLP12), which were identified as central regulators of continuous cropping stress responses. Notably, continuous cropping stress induced severe oxidative damage in root tip tissues and promoted rhizosphere proliferation of Fusarium oxysporum via exudate-mediated interactions, thereby exacerbating stress effects. Importantly, overexpression of RgRLP genes significantly alleviated continuous cropping-induced stress damage. Furthermore, transcriptomic analysis of transgenic lines revealed marked upregulation of three LRR-RLK genes (RgRLK19, RgRLK27, and RgRLK30), suggesting their potential roles in RgRLP-mediated stress signaling pathways. This study provides a good theoretical basis and technical support for in-depth study of the formation mechanism and reduction strategies of continuous cropping obstacles of R. glutinosa.
Keyword ：
Continuous cropping obstacles Continuous cropping obstacles F. oxysporum F. oxysporum LRR-RLP genes LRR-RLP genes Rehmannia glutinosa Rehmannia glutinosa
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| GB/T 7714 | Qiu, Fuxiang , Yu, Zhijian , Fan, Yongxi et al. Screening and functional characterization of Rehmannia glutinosa receptor proteins (RgRLPs) in response to continuous cropping stress [J]. | SCIENTIA HORTICULTURAE , 2025 , 344 . |
| MLA | Qiu, Fuxiang et al. "Screening and functional characterization of Rehmannia glutinosa receptor proteins (RgRLPs) in response to continuous cropping stress" . | SCIENTIA HORTICULTURAE 344 (2025) . |
| APA | Qiu, Fuxiang , Yu, Zhijian , Fan, Yongxi , Zhang, Bao , Zhang, Guojun , Lai, Yanlin et al. Screening and functional characterization of Rehmannia glutinosa receptor proteins (RgRLPs) in response to continuous cropping stress . | SCIENTIA HORTICULTURAE , 2025 , 344 . |
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Anoectochilus roxburghii (Wall.) Lindl. (A. roxburghii) is an increasingly popular medicinal herb. Arbuscular mycorrhiza (AM) fungi, known for their symbiotic relationships with plant roots, enhance nutrient uptake and disease resistance in host plants. However, their specific regulatory mechanisms in A. roxburghii are not fully understood. In this study, Fujian A. roxburghii was inoculated with the AM fungus Glomus intraradices, and successful root colonization was observed. Following AM fungal colonization, there was a significant upregulation of photosynthesis-related genes in the stems, accompanied by improved canopy phenotypes and root architecture. Consequently, AM-inoculated plants exhibited increased fresh and dry biomass, as well as elevated levels of polysaccharides and flavonoids. Additionally, the incidence of Fusarium oxysporum-induced stalk rot was reduced in AM-inoculated plants. Analysis of defense-related enzymes indicated that AM-inoculated plants exhibited a rapid and robust response to pathogen infection, mitigating oxidative stress. Transcriptomic analysis revealed significant upregulation of genes associated "Fatty acid degradation", "MAPK signaling pathway-plant", and "Plant-pathogen interaction", suggesting their involvement in enhanced disease resistance. A regulatory network centered on ACX1 and calmodulin, involving multiple transcription factors such as WRKY, bHLH, ERF, NAC, and HSF, was implicated in defense responses. These findings demonstrated the beneficial effects of AM fungi on yield, quality, and disease resistance in A. roxburghii, providing a theoretical foundation for its cultivation and genetic improvement.
Keyword ：
Anoectochilus roxburghii Anoectochilus roxburghii Arbuscular mycorrhiza fungus Arbuscular mycorrhiza fungus Bioactive compound Bioactive compound Biomass accumulation Biomass accumulation Disease resistance Disease resistance
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| GB/T 7714 | Gu, Li , Li, Shurong , Zhou, Lichun et al. Ecophysiological and transcriptional landscapes of arbuscular mycorrhiza fungi enhancing yield, quality, and stalk rot resistance in Anoectochilus roxburghii [J]. | PLANT PHYSIOLOGY AND BIOCHEMISTRY , 2025 , 223 . |
| MLA | Gu, Li et al. "Ecophysiological and transcriptional landscapes of arbuscular mycorrhiza fungi enhancing yield, quality, and stalk rot resistance in Anoectochilus roxburghii" . | PLANT PHYSIOLOGY AND BIOCHEMISTRY 223 (2025) . |
| APA | Gu, Li , Li, Shurong , Zhou, Lichun , Yuan, Feiyue , Zhang, Tingting , Wang, Yankun et al. Ecophysiological and transcriptional landscapes of arbuscular mycorrhiza fungi enhancing yield, quality, and stalk rot resistance in Anoectochilus roxburghii . | PLANT PHYSIOLOGY AND BIOCHEMISTRY , 2025 , 223 . |
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