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Identification of miRNAs and Their Targets in Cunninghamia lanceolata Under Low Phosphorus Stress Based on Small RNA and Degradome Sequencing SCIE
期刊论文 | 2025 , 26 (8) | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
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Chinese fir (Cunninghamia lanceolata (Lamb.) Hook) is one of the main afforestation tree species in southern China. Continuous planting for multiple generations has led to a decrease in the content of available phosphorus in the soil. To adapt to low phosphorus stress, plants develop a series of physiological, biochemical, and developmental responses through self-regulation. Recent studies have shown that miRNAs play a regulatory role in plants' responses to low phosphorus stress. However, the regulatory mechanism of miRNAs in Chinese fir in response to low phosphorus stress is still unclear. Here, we performed small RNA sequencing on the Chinese fir roots treated with normal phosphorus and low phosphorus and identified a total of 321 miRNAs, including 139 known miRNAs and 182 new miRNAs, with 43 differentially expressed miRNAs (DEMs). Integrative analysis combined with degradome sequencing data revealed that 193 miRNAs (98 known and 95 new) targeted 469 genes, among which 23 DEMs targeted 44 genes. Gene enrichment analysis indicated that under low phosphorus stress, transcription and transcriptional regulation, as well as signal transduction, were significantly activated in Chinese fir. Modules in the miRNA-target pathways, such as miR166/HD-ZIP III, miR169/NFYA7, miR529/SPL, and miR399/UBC23, may be the key regulatory factors in the response to low phosphorus stress in Chinese fir. In addition, we found that PC-3p-1033_8666 was significantly downregulated and that PC-5p-3786_2830 was significantly upregulated, which presumably respond to low phosphorus stress by indirectly affecting phosphorus-related hormone signaling or PSR genes. The identified miRNA-target network and significantly activated pathways in this study provide insights into the post-transcriptional regulatory mechanisms of Chinese fir adapting to low phosphorus environments, which can offer theoretical references for the stress resistance and superior variety breeding of Chinese fir.

Keyword :

Cunninghamia lanceolata Cunninghamia lanceolata degradome degradome low phosphorus stress low phosphorus stress miRNA miRNA

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GB/T 7714 Li, Meng , Ye, Xiaopeng , Zhao, Ziyu et al. Identification of miRNAs and Their Targets in Cunninghamia lanceolata Under Low Phosphorus Stress Based on Small RNA and Degradome Sequencing [J]. | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES , 2025 , 26 (8) .
MLA Li, Meng et al. "Identification of miRNAs and Their Targets in Cunninghamia lanceolata Under Low Phosphorus Stress Based on Small RNA and Degradome Sequencing" . | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 26 . 8 (2025) .
APA Li, Meng , Ye, Xiaopeng , Zhao, Ziyu , Zeng, Yifan , Huang, Chaozhang , Ma, Xiangqing et al. Identification of miRNAs and Their Targets in Cunninghamia lanceolata Under Low Phosphorus Stress Based on Small RNA and Degradome Sequencing . | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES , 2025 , 26 (8) .
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Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species SCIE
期刊论文 | 2025 , 15 (4) | ECOLOGY AND EVOLUTION
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Climate change and strait isolation during the glacial period had a profound effect on the differentiation of gymnosperms on both sides of the Taiwan Strait. The taxonomic status and population structure of Cunninghamia konishii (Taiwan) and C. lanceolata (mainland China) remain contentious due to conflicting morphological and molecular evidence. Thus, we sampled 92 accessions from seven natural populations, six from mainland China and one from Taiwan, and conducted high-throughput genotyping-by-sequencing (GBS) analysis. The northern marginal population exhibited the lowest genetic diversity (theta pi = 4.828 x 10-3), while the Taiwan population had the highest (theta pi = 5.821 x 10-3), reflecting its role as a glacial refugium, while mainland populations retained lower diversity due to post-glacial bottlenecks. There was little difference in Tajima's D values of selection pressure between mainland China and Taiwan. However, significant gene flow (Nm = 2.839) was observed, combined with low FST values (0.072-0.122), which indicate low genetic differentiation among C. lanceolata and C. konishii. Migration analysis indicated a high probability of unidirectional gene flow from mainland China to Taiwan, with the Dongshan Land Bridge facilitating pre-glacial gene flow. We conclude that C. konishii represents an ecotype of C. lanceolata , shaped by environmental plasticity and incomplete isolation. This study enhances our understanding of the gene flow and evolutionary processes shaping the species and offers new insights into their taxonomic classification.

Keyword :

Chinese fir Chinese fir Genetic Diversity Genetic Diversity Genotyping by Sequencing (GBS) Genotyping by Sequencing (GBS) Population Structure Population Structure Single-Nucleotide Polymorphism (SNP) Discovery Single-Nucleotide Polymorphism (SNP) Discovery

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GB/T 7714 Zhang, Yajing , Sun, Yangyang , Zhong, Minchen et al. Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species [J]. | ECOLOGY AND EVOLUTION , 2025 , 15 (4) .
MLA Zhang, Yajing et al. "Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species" . | ECOLOGY AND EVOLUTION 15 . 4 (2025) .
APA Zhang, Yajing , Sun, Yangyang , Zhong, Minchen , Chen, Fenglin , Wang, Yaning , Tigabu, Mulualem et al. Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species . | ECOLOGY AND EVOLUTION , 2025 , 15 (4) .
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Differential effects of exogenous VOCs on the growth and stress responses of Cunninghamia lanceolata seedlings under low phosphorus SCIE
期刊论文 | 2025 , 25 (1) | BMC PLANT BIOLOGY
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This study investigates how exogenous volatile organic compounds (VOCs) influence the root responses of Cunninghamia lanceolata under nutrient limitations. Specifically, we assessed the differential effects of syringic acid and 1-butene on root morphology, phosphorus acquisition, and stress resilience. Clonal Chinese fir seedlings were utilized to test the effects of treatment with these two exogenous VOCs under both phosphorus supply (1.0 mM KH2PO4) and no phosphorus supply (0 mM KH2PO4) treatments in a controlled pot experiment. Compared to syringic acid, 1-butene significantly enhanced root morphological traits, including root length, specific surface area, and root volume. These morphological changes enhanced the root's ability to acquire phosphorus. Moreover, the addition of 1-butene increased the underground phosphorus use efficiency (PUE) by 25.6% compared to the addition of syringic acid. Furthermore, the addition of 1-butene stimulated higher activity of antioxidant enzymes such as superoxide dismutase (SOD) and peroxidase (POD). Proteomic analysis revealed that 1-butene induced significant changes in root protein expression, particularly in proteins associated with stress responses, phenylpropanoid biosynthesis, and phosphate transport. Compared to syringic acid, 1-butene promoted the differential expression of phosphate transporter proteins, indicating its beneficial effects on the root systems of Chinese firs under low-phosphorus stress. These findings underscore the potential of 1-butene in promoting root efficiency and phosphorus acquisition in forest species, providing insights for enhancing plant adaptation to nutrient limitations.

Keyword :

1-butene 1-butene Cunninghamia lanceolata Cunninghamia lanceolata Low P environment Low P environment Stress resistance Stress resistance Syringic acid Syringic acid Volatile organic compounds Volatile organic compounds

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GB/T 7714 Li, Yachao , Zhang, Hui , Liu, Jing et al. Differential effects of exogenous VOCs on the growth and stress responses of Cunninghamia lanceolata seedlings under low phosphorus [J]. | BMC PLANT BIOLOGY , 2025 , 25 (1) .
MLA Li, Yachao et al. "Differential effects of exogenous VOCs on the growth and stress responses of Cunninghamia lanceolata seedlings under low phosphorus" . | BMC PLANT BIOLOGY 25 . 1 (2025) .
APA Li, Yachao , Zhang, Hui , Liu, Jing , Li, Ming , Farooq, Taimoor Hassan , Ma, Xiangqing et al. Differential effects of exogenous VOCs on the growth and stress responses of Cunninghamia lanceolata seedlings under low phosphorus . | BMC PLANT BIOLOGY , 2025 , 25 (1) .
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Effects of Planting Density on Branch Development and Spatial Distribution in Two Elite Chinese Fir (Cunninghamia lanceolata (Lamb.) Hook.) Clones SCIE
期刊论文 | 2025 , 16 (1) | FORESTS
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The development of branches on the lower part of the trunk plays a decisive role in the early growth of trees and influences the wood quality of their most valuable sections. This study investigated the effects of planting density on the horizontal and vertical spatial distribution, branch morphology, and branch quantity characteristics of two elite clones of Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.), Yang 061 and Yang 020. The results revealed the following distinct responses between the two clones: Yang 061 exhibited significant reductions in branch base diameter and length under a higher planting density, alongside an increased frequency of small branches (<15 mm), but there was no significant effect on branch angles. In contrast, Yang 020 was primarily influenced by genetic factors, with planting density exerting minimal impact. This clone optimized resource allocation by promoting the mortality of lower branches through angle adjustments, resulting in negligible changes to branch development across different planting densities. Pronounced differences in vertical and horizontal branch distributions were observed in areas with significant light disparities, such as the middle crown and northeast direction, for both clones, with increased planting density exacerbating these differences. In conclusion, increasing the planting density of Yang 061 from 2500 to 3333 treesha(-1) can effectively reduce its branch size; whereas, increasing the planting density of Yang 020 from 3000 to 5100 treesha(-1) can slightly decrease its branch size without affecting its early rapid growth, thereby achieving a synergistic improvement in both timber yield and quality. These findings highlight the importance of interactions between genetic traits and planting density in shaping branch development and spatial distribution patterns, providing insights to optimize planting density for improving the productivity and wood quality of Cunninghamia lanceolata plantations.

Keyword :

branch morphology branch morphology clone selection clone selection Cunninghamia lanceolata Cunninghamia lanceolata forestry management forestry management planting density planting density spatial distribution spatial distribution

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GB/T 7714 Peng, Jun , Jiang, Yuhui , Shi, Lang et al. Effects of Planting Density on Branch Development and Spatial Distribution in Two Elite Chinese Fir (Cunninghamia lanceolata (Lamb.) Hook.) Clones [J]. | FORESTS , 2025 , 16 (1) .
MLA Peng, Jun et al. "Effects of Planting Density on Branch Development and Spatial Distribution in Two Elite Chinese Fir (Cunninghamia lanceolata (Lamb.) Hook.) Clones" . | FORESTS 16 . 1 (2025) .
APA Peng, Jun , Jiang, Yuhui , Shi, Lang , Xie, Shengfang , Zhang, Xinyu , Wu, Pengfei et al. Effects of Planting Density on Branch Development and Spatial Distribution in Two Elite Chinese Fir (Cunninghamia lanceolata (Lamb.) Hook.) Clones . | FORESTS , 2025 , 16 (1) .
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Time-course transcriptome and proteomic dynamics during the de novo shoot organogenesis in Chinese fir (Cunninghamia lanceolata) SCIE
期刊论文 | 2025 , 123 (3) | PLANT JOURNAL
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De novo shoot organogenesis (DNSO) enables plants to regenerate shoots from various explants, offering valuable opportunities for research and plant biotechnology applications. While significant progress has been made in understanding regeneration in angiosperms, the regulatory mechanisms in gymnosperms, particularly Chinese fir (Cunninghamia lanceolata), remain poorly understood, despite its importance as a key timber species in China. This study successfully established an efficient DNSO protocol for Chinese fir, identifying six distinct stages in the process through cellular-level analysis. Time-course transcriptome and proteomics analyses revealed dynamic changes in mRNA and protein levels during regeneration. Notably, proteins showed more significant alterations across a broad range of biological processes, often independent of corresponding mRNA changes. Key pathways associated with ethylene metabolism and abiotic stress responses were enriched, highlighting their critical roles in regeneration. Further experiments confirmed that moderate osmotic stress treatments (150 mm mannitol) and ethylene treatment (100 mu m ACC and 5 mu m AgNO3) substantially enhanced DNSO efficiency. In summary, this study uncovers the molecular mechanisms underlying Chinese fir DNSO, providing valuable insights into improving plant regeneration efficiency in this economically important species. These findings contribute to advancements in plant biotechnology and sustainable forestry practices.

Keyword :

abiotic stress abiotic stress Chinese fir Chinese fir De novo shoot organogenesis De novo shoot organogenesis proteome proteome transcriptome transcriptome

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GB/T 7714 Ding, Wensha , Ye, Shanwen , Wu, Duoke et al. Time-course transcriptome and proteomic dynamics during the de novo shoot organogenesis in Chinese fir (Cunninghamia lanceolata) [J]. | PLANT JOURNAL , 2025 , 123 (3) .
MLA Ding, Wensha et al. "Time-course transcriptome and proteomic dynamics during the de novo shoot organogenesis in Chinese fir (Cunninghamia lanceolata)" . | PLANT JOURNAL 123 . 3 (2025) .
APA Ding, Wensha , Ye, Shanwen , Wu, Duoke , Wang, Wanping , Xu, Junjie , Wang, Wenjia et al. Time-course transcriptome and proteomic dynamics during the de novo shoot organogenesis in Chinese fir (Cunninghamia lanceolata) . | PLANT JOURNAL , 2025 , 123 (3) .
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林学专业“树木营养学”课程教学改革的探索——以福建农林大学为例
期刊论文 | 2025 , 43 (02) , 54-58 | 中国林业教育
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一流课程是支撑高水平人才培养的核心要素。在一流本科课程建设背景下,提高线下课程建设的系统性和规划性,提升专业课程教学体系设计的整体性,是线下一流课程建设的主要方向。福建农林大学林学专业“树木营养学”课程作为面向本科生开设的专业选修课程,在课程建设和教学中面临的主要问题是:课程的教学内容及其构建的理论知识体系的创新性和高阶性不足,与相关学科专业知识的交叉融合不够,缺少学科的前沿性内容和紧密联系林业生产实践的实用性内容;课程实验和实践教学的高阶性和挑战度不足,实验的内容单一、仪器设备老旧,实践教学理念和教学条件与林木生产实际脱节;课程的知识体系主要以农作植物营养理论为基础,而且涉及生理学、土壤学、生物化学等多学科的知识,学习难度较大,学生学习的积极性和主动性不高。针对上述问题,“树木营养学”课程教学团队在以下方面进行了课程教学改革探索。一是修订课程教学目标,根据学校办学定位和行业发展需求,结合教学对象对专业知识的掌握情况,以培养“服务产业型区域特色林学人才”为目标,强调树木和林地营养学知识教学和相关能力培养。二是通过优化整合将课程核心内容凝练为“林木营养理论”和“养分管理实践”两部分,通过设计融合多学科知识的、具有产业特色的、吸纳相关科研成果的教学案例和教学专题等提升教学内容的深度和广度,围绕促进上下游课程链衔接以及与区域生态林业发展实际需求和新技术新成果对接等重构课程的知识体系。三是加强教学课件、分析案例、经典文献、课后习题等网络学习资源的建设,并采用“三段式+”教学方法科学组织课前、课中、课后教学,通过开展课前预习、引导性教学和延展性学习以及设置课程知识竞赛环节等强化学生在教学中的主体地位。四是以生态理念、绿色发展、林业情怀、科学素养和敬业精神为主线,在教学内容融合方面依托专业教学案例探索思政教育内容多样化供给,在教学路径融合方面探索理论教学与实践教学相结合的思政教育方式,从而加强专业教育与思想政治教育的有效融合。五是改进实践教学,通过优化调整课程实验内容和方案,增强实验教学的高阶性和挑战度;充分利用校内实践基地和毕业实习环节等组织林木林地营养管理全过程的实践,加强实践教学与林业生产实际的结合。六是积极开展课外延伸教学,引导学生参加教师的科研项目、结合教师课题开展毕业论文设计或申请大学生创新性试验,同时利用教师的横向课题和学生的社会实践项目促进实践教学与各种形式的课外延伸教学对接。七是改进课程成绩评定模式,采取平...

Keyword :

一流课程建设 一流课程建设 “三段式+”教学方法 “三段式+”教学方法 教学内容 教学内容 本科教育 本科教育 树木营养学 树木营养学 课外延伸教学 课外延伸教学 课程教学 课程教学

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GB/T 7714 李明 , 马祥庆 , 江汉森 et al. 林学专业“树木营养学”课程教学改革的探索——以福建农林大学为例 [J]. | 中国林业教育 , 2025 , 43 (02) : 54-58 .
MLA 李明 et al. "林学专业“树木营养学”课程教学改革的探索——以福建农林大学为例" . | 中国林业教育 43 . 02 (2025) : 54-58 .
APA 李明 , 马祥庆 , 江汉森 , 李树斌 . 林学专业“树木营养学”课程教学改革的探索——以福建农林大学为例 . | 中国林业教育 , 2025 , 43 (02) , 54-58 .
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一种杉木无节板材的定向培育方法 ipsunlight
专利 | 2024-12-30 | CN202411967651.8
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本发明属于林木技术领域,具体涉及一种杉木无节板材的定向培育方法。本发明所述杉木无节板材的定向培育方法通过限定杉木林地地位指数、对目标杉木进行修枝处理、分次间伐、主伐等一系列关键技术,为杉木无节板材定向培育提供科学依据。实施例结果表明,采用本发明所述方法,在幼龄阶段对目标杉木进行修枝处理,可提高杉木的饱满度以及木材顺纹抗压强度,提高杉木大径级无节板材的出材率,并且不会显著降低杉木木材的物理力学性质。

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GB/T 7714 李明 , 陈凤林 , 张娅静 et al. 一种杉木无节板材的定向培育方法 : CN202411967651.8[P]. | 2024-12-30 .
MLA 李明 et al. "一种杉木无节板材的定向培育方法" : CN202411967651.8. | 2024-12-30 .
APA 李明 , 陈凤林 , 张娅静 , 钟旻宸 , 何宗明 , 吴鹏飞 et al. 一种杉木无节板材的定向培育方法 : CN202411967651.8. | 2024-12-30 .
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杉木根系残落物化感物质及其对土壤生物多样性的影响
期刊论文 | 2025 , 38 (02) , 25-31 | 世界林业研究
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在我国南方林区,杉木人工林多代连栽造成的林地生产力衰退已成为制约其可持续发展的突出难题。杉木根系残落物作为森林凋落物的重要组成成分,其腐败、分解过程中产生的化感物质对杉木种子、幼苗生长发育造成显著影响,严重制约了杉木人工林的营造与更新,还极大地干扰了土壤生物群落多样性,致使土壤生态平衡失调,对林地生态系统影响深远,是导致杉木人工林土壤肥力日渐下降的重要因素之一。文中通过梳理杉木根系残落物中化感物质的种类、释放途径及其影响因素,剖析其对杉木种子萌发、幼苗生长发育及林分生长的影响规律,进一步归纳总结其对土壤动物、微生物等生物群落多样性的影响,并对杉木根系残落物的未来研究方向进行展望。

Keyword :

化感物质 化感物质 土壤动物 土壤动物 土壤微生物 土壤微生物 杉木 杉木 根系残落物 根系残落物

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GB/T 7714 钱奕 , 马祥庆 , 田云龙 et al. 杉木根系残落物化感物质及其对土壤生物多样性的影响 [J]. | 世界林业研究 , 2025 , 38 (02) : 25-31 .
MLA 钱奕 et al. "杉木根系残落物化感物质及其对土壤生物多样性的影响" . | 世界林业研究 38 . 02 (2025) : 25-31 .
APA 钱奕 , 马祥庆 , 田云龙 , 周丽丽 , 李林鑫 , 吴鹏飞 . 杉木根系残落物化感物质及其对土壤生物多样性的影响 . | 世界林业研究 , 2025 , 38 (02) , 25-31 .
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不同品系杉木苗期物候及生长节律比较
期刊论文 | 2025 , 52 (01) , 35-41,48 | 福建林业科技
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为比较不同品系杉木的物候和生长节律的差异,以福建洋口国有林场杉木无性系洋020、洋061和湖北罗田垂枝杉1年生苗木为研究对象,于2021年2月—2022年2月定期进行不同品系杉木物候、苗高、地径、侧枝数、侧枝长度、侧枝基径、侧枝角度的测定,比较不同品系杉木苗期物候及生长节律的差异。结果表明:不同品系杉木的苗期物候期存在差异,洋020、洋061的芽活动期比罗田垂枝杉早,且新梢生长期较长;侧枝生长表现出更明显的物候节律差异,罗田垂枝杉侧枝形成及生长时间开始较早,而洋061侧枝形成时间及生长时间最迟;但不同品系杉木间的生长节律差异不明显。不同品系杉木苗高、地径、侧枝长度的年生长表现出明显“慢—快—慢”节律,可将杉木苗期生长过程分为生长缓慢期、生长速生期、生长停滞期。

Keyword :

品系 品系 杉木 杉木 物候 物候 生长节律 生长节律

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GB/T 7714 吴雅琳 , 黄丽娜 , 李明 et al. 不同品系杉木苗期物候及生长节律比较 [J]. | 福建林业科技 , 2025 , 52 (01) : 35-41,48 .
MLA 吴雅琳 et al. "不同品系杉木苗期物候及生长节律比较" . | 福建林业科技 52 . 01 (2025) : 35-41,48 .
APA 吴雅琳 , 黄丽娜 , 李明 , 吴鹏飞 , 马祥庆 . 不同品系杉木苗期物候及生长节律比较 . | 福建林业科技 , 2025 , 52 (01) , 35-41,48 .
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Morphophysiological adjustments and antioxidant defense in main tree species of southern China to simulated acid deposition SCIE
期刊论文 | 2025 , 39 (4) , 399-411 | INTERNATIONAL AGROPHYSICS
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Abstract :

Acid deposition has become a significant issue due to increased pollution and forest degradation. To examine the response of acid deposition in Fuzhou, a city in Fujian Province, we investigated the physiology, morphology, osmotic adaptation, photosynthetic characteristics, and antioxidant defense of Pinus massoniana, Cunninghamia lanceolata, Liquidambar formosana, Schima superba, and Phoebe zhennan. Seedlings were subjected to pH levels of 2.5, 3.5, 4.5, and 5.5 in a greenhouse experiment. Plant height, diameter, and biomass increased in the control group (6.5); however, pH 4.5 and 5.5 resulted in tall and thin seedlings. Height and diameter decreased under increased acid deposition specifically at pH 2.5 and 3.5. Biochemical parameters and chlorophyll contents were reduced under low pH levels. The activities of catalase, peroxidase, superoxide dismutase, malonaldehyde, and proline increased initially under low pH, but decreased later due to high acidity, whereas soluble sugar and protein contents were inhibited under higher acidity levels (pH 2.5 and 3.5). The findings showed that the seedlings responded differently but more sensitively to acid deposition below pH 4.5. The exposure to less acidic deposition had a slight effect on the development of these tree seedlings. This trial aids in detecting bioindicators and resilient species to acid deposition existing in forests and urban areas.

Keyword :

acid rain acid rain antioxidant enzyme antioxidant enzyme gas exchange gas exchange osmotic adjustment osmotic adjustment photosynthesis photosynthesis

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GB/T 7714 Gilani, Matoor M. , Noman, Ali , Farooq, Taimoor H. et al. Morphophysiological adjustments and antioxidant defense in main tree species of southern China to simulated acid deposition [J]. | INTERNATIONAL AGROPHYSICS , 2025 , 39 (4) : 399-411 .
MLA Gilani, Matoor M. et al. "Morphophysiological adjustments and antioxidant defense in main tree species of southern China to simulated acid deposition" . | INTERNATIONAL AGROPHYSICS 39 . 4 (2025) : 399-411 .
APA Gilani, Matoor M. , Noman, Ali , Farooq, Taimoor H. , Yasin, Ghulam , Rashid, Muhammad H. U. , Zubair, Muhammad et al. Morphophysiological adjustments and antioxidant defense in main tree species of southern China to simulated acid deposition . | INTERNATIONAL AGROPHYSICS , 2025 , 39 (4) , 399-411 .
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