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学者姓名：郑朝元
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Introduction Flavonoids are the most abundant secondary metabolites in plants and play important roles in plant growth, environmental adaptation, and human health. Tobacco serves as a vital cash crop and key source of flavonoids. Given tobacco's high nitrogen demand and the particular sensitivity of flavonoid synthesis to nitrogen supply, understanding the regulatory mechanisms of flavonoid biosynthesis under varying nitrogen conditions is essential.Methods and results We systematically investigated the flavonoid biosynthesis pathways in the cigar tobacco cultivar Haiyan 204 under different nitrogen application rates using integrated transcriptomic and metabolomic analyses. This study identified 694 differentially expressed metabolites (DEMs) and 6,114 differentially expressed genes (DEGs). Integrated analyses revealed significant enrichment in the flavonoid biosynthesis and phenylpropanoid biosynthesis pathways. A regulatory network of flavonoid biosynthesis in response to nitrogen was constructed. Weighted gene co-expression network analysis (WGCNA) identified CHS2 as a key gene strongly associated with flavonoid biosynthesis, alongside its potential regulatory transcription factors MYB7, MYB9, bHLH14, and MYB_related1. The reliability of transcriptome data was validated via qPCR.Discussion These results provide a scientific basis for elucidating the biosynthesis mechanisms of tobacco flavonoids and identifying key nitrogen-responsive genes. The constructed regulatory network and identified transcriptional regulators offer critical insights into nitrogen-modulated flavonoid synthesis in cigar tobacco.
Keyword ：
cigar tobacco cigar tobacco flavonoids flavonoids metabolomics metabolomics nitrogen nitrogen transcriptomics transcriptomics
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| GB/T 7714 | Jia, Kai , Shi, Juanjuan , Bai, Lingli et al. Integrated transcriptomic and metabolomic analysis of flavonoid biosynthesis in cigar tobacco leaves under variable nitrogen regimes [J]. | FRONTIERS IN PLANT SCIENCE , 2025 , 16 . |
| MLA | Jia, Kai et al. "Integrated transcriptomic and metabolomic analysis of flavonoid biosynthesis in cigar tobacco leaves under variable nitrogen regimes" . | FRONTIERS IN PLANT SCIENCE 16 (2025) . |
| APA | Jia, Kai , Shi, Juanjuan , Bai, Lingli , Wang, Xueren , Wang, Yuemin , Li, Xiangzhen et al. Integrated transcriptomic and metabolomic analysis of flavonoid biosynthesis in cigar tobacco leaves under variable nitrogen regimes . | FRONTIERS IN PLANT SCIENCE , 2025 , 16 . |
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Phyllosphere, the aerial surface of plants, harbors a tremendous diversity of microbes that significantly influences plant health and ecosystem functionality. Nevertheless, a holistic understanding of the effects of nutrient management, particularly magnesium (Mg) supplementation, on phyllosphere endophytes remains elusive. Herein, we conducted a five-year field experiment to investigate the impact of different nutrient management practices, including farmer practice of high N.P.K input (FP), reduced N.P.K input (OPT), and OPT supplemented with Mg (OPT+Mg), on the phyllosphere endophytic bacterial community (Illumina 16S sequencing) associated with fruit and leaf of pomelo trees across different growth stages, i.e., June (S1), July (S2), and September (S3). The results demonstrated that Mg-enriched nutrient management (OPT+Mg), significantly enhanced microbial diversity and restructured community composition, with notable increases in the relative abundance of beneficial phyla such as Actinobacteriota, Bacteroidota, and Chloroflexi compared with FP across all growing seasons. Similarly, both OPT and OPT+Mg generally supported higher microbial diversity than FP in fruit and leaf samples. Principal Coordinate Analysis (PCoA) and PERMANOVA confirmed significant differences in bacterial community structures among treatments. Ternary plot analysis further indicated the enrichment of beneficial genera under OPT and OPT+Mg treatments, which can play key roles in promoting plant growth and enhancing resilience against various stresses. In addition, Mg application was associated with more complex co-occurrence networks, highlighting its impact on promoting robust microbial communities in leaf and fruit samples. Functional predictions (FAPROTAX) suggested that Mg application was associated with higher predicted carbon and nitrogen cycling functions and lower predicted relative abundances of potential plant pathogens and intracellular parasites. This study is the first to provide long-term field-based evidence of how Mg supplementation modulates phyllosphere microbiota in fruit orchards, offering critical insights into microbiome-informed nutrient strategies. These findings highlight the unexplored role of Mg in shaping aerial plant microbiomes and present a novel avenue for enhancing sustainable pomelo production through targeted nutrient-microbiome interventions.
Keyword ：
Bacteria Bacteria Endophytes Endophytes Magnesium Magnesium Nutrient management Nutrient management Phyllosphere Phyllosphere Pomelo Pomelo
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| GB/T 7714 | Muneer, Muhammad Atif , Huang, Rong , Xiaojun, Yan et al. Mg-enriched nutrient management enhances phyllosphere bacterial diversity, community structure, and functional traits in pomelo orchards [J]. | CURRENT RESEARCH IN MICROBIAL SCIENCES , 2025 , 9 . |
| MLA | Muneer, Muhammad Atif et al. "Mg-enriched nutrient management enhances phyllosphere bacterial diversity, community structure, and functional traits in pomelo orchards" . | CURRENT RESEARCH IN MICROBIAL SCIENCES 9 (2025) . |
| APA | Muneer, Muhammad Atif , Huang, Rong , Xiaojun, Yan , Pang, Ziqin , Munir, Muhammad Zeeshan , Ji, Baoming et al. Mg-enriched nutrient management enhances phyllosphere bacterial diversity, community structure, and functional traits in pomelo orchards . | CURRENT RESEARCH IN MICROBIAL SCIENCES , 2025 , 9 . |
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土壤作为供给烟株微量元素的主要来源，进行植烟土壤微量元素丰缺程度及其影响因素的研究对于烤烟生产尤为重要。通过分析福建省烟区2005年及2018年2次植烟土壤普查数据，利用地统计学方法，对福建省植烟土壤微量元素（铁、锰、铜、锌）养分时空变异特征及其驱动因素进行研究。本研究表明：2005—2018年的14年间，土壤微量元素含量虽有一定的上下浮动，但均处于“丰富”或“极丰”水平。进一步研究后发现，2018年福建省植烟土壤有效铁含量主要集中在200～350 mg/kg区间(83.90%)，受非结构性因素的影响逐渐增强；有效锰含量主要集中在10～25 mg/kg区间(90.14%)，仍主要受结构性因素影响；有效铜含量主要集中在1.5～3 mg/kg区间(80.44%)，受结构性因素和非结构性因素共同影响；有效锌含量主要集中在1.5～4 mg/kg区间(91.88%)，空间自相关性与土壤有效铜相似。相关分析和逐步回归分析结果显示，土壤pH与有机质与土壤微量元素含量直接相关，而土壤交换性镁则通过对pH的影响与微量元素间接相关。福建省烟区基本不存在铁、锰、铜、锌等微量元素缺乏土壤，整体含量偏高。在福建省土壤偏酸性背景下可采取以氢氧化镁、氧化镁、钙镁磷肥替代硫酸镁肥的措施对于土壤微量元素进行一定的调控。
Keyword ：
丰缺程度 丰缺程度 土壤pH 土壤pH 地统计学方法 地统计学方法 微量元素 微量元素 时空变异特征 时空变异特征 有机质 有机质 植烟土壤 植烟土壤 福建省 福建省
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| GB/T 7714 | 徐志豪 , 贾凯 , 谢榕榕 et al. 福建省植烟土壤微量元素时空变异研究 [J]. | 中国农学通报 , 2025 , 41 (06) : 100-108 . |
| MLA | 徐志豪 et al. "福建省植烟土壤微量元素时空变异研究" . | 中国农学通报 41 . 06 (2025) : 100-108 . |
| APA | 徐志豪 , 贾凯 , 谢榕榕 , 朱晨宇 , 王月敏 , 曾文龙 et al. 福建省植烟土壤微量元素时空变异研究 . | 中国农学通报 , 2025 , 41 (06) , 100-108 . |
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Magnesium (Mg) is essential for plant photosynthesis and redox balance. This study investigated the "photosynthetic inhibition-oxidative stress" cascade mechanism induced by Mg deficiency during the vegetative growth period (100 days after transplantation) of tobacco. A Mg gradient system (0, 0.25, 1.99 mM; Mg0, Mg1/8, Mg1) combined with multi-omics analysis revealed three mechanisms by which Mg0 impaired photosynthetic efficiency: (1) structural damage to the photosystem, including downregulation of light-harvesting complex (LHC) II /LHCI genes (NtLhcb2s and NtLhca3/4/6) and PSII core proteins (NtPsbD and NtPsbO1s); (2) disruption of chlorophyll metabolism, characterized by a significant decrease in NtCHs family gene expression, leading to abnormal chloroplast development; and (3) impaired electron transport (ET), confirmed by decreased quantum yield for ET (ET0/ABS) and maximum quantum yield of primary photochemistry (Fv/Fm), and damaged to the oxygen-evolving complex (OEC). Antioxidant genes (NtSOD, NtAPX, and NtGST) increase without a corresponding increase in enzyme activity, indicating transcript-enzyme decoupling; any reactive oxygen species (ROS)-dependent post-translational regulation remains to be tested. Mg1/8-treatment almost restored physiological balance by enhancing linear-ET efficiency and activating a Mg-independent ROS scavenging pathway (NtGSTs upregulated), although some stress markers remained above Mg1. These findings provide an integrated, system-level view of the impacts of Mg deficiency in tobacco and lay the groundwork for hypothesis-driven mechanistic studies.
Keyword ：
Mg-deficiency Mg-deficiency OJIP transients OJIP transients Oxidative stress Oxidative stress Photosynthesis Photosynthesis Transcriptome analysis Transcriptome analysis
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| GB/T 7714 | Xie, Rong-Rong , Gao, Jingjuan , Wu, Changzheng et al. Magnesium deficiency limits electron transport efficiency and photosynthesis, and induces oxidative stress in tobacco [J]. | PLANT SCIENCE , 2025 , 362 . |
| MLA | Xie, Rong-Rong et al. "Magnesium deficiency limits electron transport efficiency and photosynthesis, and induces oxidative stress in tobacco" . | PLANT SCIENCE 362 (2025) . |
| APA | Xie, Rong-Rong , Gao, Jingjuan , Wu, Changzheng , Guo, Jinping , Cheng, Qian , Wang, Hailu et al. Magnesium deficiency limits electron transport efficiency and photosynthesis, and induces oxidative stress in tobacco . | PLANT SCIENCE , 2025 , 362 . |
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Phyllosphere endophytes play a critical role in a myriad of biological functions, such as maintaining plant health and overall fitness. They play a determinative role in crop yield and quality by regulating vital processes, such as leaf functionality and longevity, seed mass, apical growth, flowering, and fruit development. This study conducted a comprehensive bibliometric analysis aiming to review the prevailing research trajectories in phyllosphere endophytes and harness both primary areas of interest and emerging challenges. A total of 156 research articles on phyllosphere endophytes, published between 2002 and 2022, were retrieved from the Web of Science Core Collection (WoSCC). A systematic analysis was conducted using CiteSpace to visualize the evolution of publication frequency, the collaboration network, the co-citation network, and keywords co-occurrence. The findings indicated that initially, there were few publications on the topic of phyllosphere endophytes. However, from 2011 onwards, there was a notable increase in the number of publications on phyllosphere endophytes, gaining worldwide attention. Among authors, Arnold, A Elizabeth is widely recognized as a leading author in this research area. In terms of countries, the USA and China hold the highest rankings. As for institutional ranking, the University of Arizona is the most prevalent and leading institute in this particular subject. Collaborative efforts among the authors and institutions tend to be confined to small groups, and a large-scale collaborative network needs to be established. This study identified the influential journals, literature, and hot research topics. These findings also highlight the interconnected nature of key themes, e.g., phyllosphere endophyte research revolves around the four pillars: diversity, fungal endophytes, growth, and endophytic fungi. This study provides an in-depth perspective on phyllosphere endophytes studies, revealing the identification of biodiversity and microbial interaction of phyllosphere endophytes as the principal research frontiers. These analytical findings not only elucidate the recent trajectory of phyllosphere endophyte research but also provide invaluable insights for similar studies and their potential applications on a global scale.
Keyword ：
Bibliometric analysis Bibliometric analysis CiteSpace CiteSpace Endophyte Endophyte Microbial interaction Microbial interaction Phyllosphere Phyllosphere Review Review
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| GB/T 7714 | Muneer, Muhammad Atif , Chen, Xiaohui , Wang, Hexin et al. Unraveling two decades of phyllosphere endophytes: tracing research trends and insights through visualized knowledge maps, with emphasis on microbial interactions as emerging frontiers [J]. | STRESS BIOLOGY , 2024 , 4 (1) . |
| MLA | Muneer, Muhammad Atif et al. "Unraveling two decades of phyllosphere endophytes: tracing research trends and insights through visualized knowledge maps, with emphasis on microbial interactions as emerging frontiers" . | STRESS BIOLOGY 4 . 1 (2024) . |
| APA | Muneer, Muhammad Atif , Chen, Xiaohui , Wang, Hexin , Munir, Muhammad Zeeshan , Afridi, Muhammad Siddique , Yan, Xiaojun et al. Unraveling two decades of phyllosphere endophytes: tracing research trends and insights through visualized knowledge maps, with emphasis on microbial interactions as emerging frontiers . | STRESS BIOLOGY , 2024 , 4 (1) . |
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为探索烤烟合理的施镁方式，以不施镁肥为对照，设置根部基施、根部追施、根部基施+根部追施、根部基施+叶面追施4个施镁处理，比较不同施镁方式烤烟生长后期生理代谢差异。结果表明：施镁处理中，根部追施处理潜在光合效率、最大光化合效率显著大于根部基施处理及根部基施+根部追施处理。根部追施及根部基施+叶面追施处理蔗糖磷酸合成酶、硝酸还原酶、谷氨酰胺合成酶、超氧化物歧化酶、过氧化氢酶、过氧化物酶活性显著高于根部基施处理，增幅分别为12.29%～32.20%、23.38%～53.90%、11.43%～14.29%、19.86%～22.70%、28.30%～32.08%、17.15%～24.65%，丙二醛、H
Keyword ：
光合作用 光合作用 抗氧化酶活性 抗氧化酶活性 施镁方式 施镁方式 烤烟 烤烟 碳氮代谢 碳氮代谢
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| GB/T 7714 | 王月敏 , 谢榕榕 , 柯玉琴 et al. 不同施镁方式对烤烟生长后期生理代谢的影响 [J]. | 中国烟草科学 , 2024 , 45 (05) : 33-40 . |
| MLA | 王月敏 et al. "不同施镁方式对烤烟生长后期生理代谢的影响" . | 中国烟草科学 45 . 05 (2024) : 33-40 . |
| APA | 王月敏 , 谢榕榕 , 柯玉琴 , 郑朝元 , 郭金平 , 李文卿 . 不同施镁方式对烤烟生长后期生理代谢的影响 . | 中国烟草科学 , 2024 , 45 (05) , 33-40 . |
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Essential macronutrients, including nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), magnesium (Mg), and sulfur (S), significantly contribute to plant growth and developmental processes. The occurrence of nutritional stress, particularly the inadequate application of essential macronutrients, leads to the manifestation of numerous deficiency symptoms because of suboptimal nutrients supply. The utilization of visual deficiency symptoms has been widely employed in the field of plant nutrition for the purpose of assessing the nutritional status and optimizing the efficacy of fertilizer application. Hence, it is imperative to comprehend the morphological, physiological, and molecular changes exhibited by fruit trees in response to nutrient stress. This review discussed to establish a comprehensive connection between the visual phenotypic deficiency symptoms and the underlying molecular and physiological responses correlated with macronutrient dynamics in fruit trees. we proposed a range of nutrient management strategies, including integrated nutrient management and the principles of the 4 R's (right source, right rate, right time, and right place) that can be supportive for better plant growth and optimized production under nutrients stress environment. We also explored the significant contribution of advanced molecular tools such as omics tools (genomics, transcriptomics, proteomics, metabolomics, and ionomics) and automatized technologies (imaging technology, remote sensing, and in-field sensors). These advancements are integral to integrated nutrient management, as these can be harnessed for improving fruit tree nutrition and promoting sustainability in orchard systems. These recent advancements underlying plant responses to nutrients deficiencies offer an invaluable opportunity for a deeper understanding of macronutrients functionality in fruit trees.
Keyword ：
Fruit Trees Fruit Trees Macronutrients Macronutrients Management strategies Management strategies Nutrients deficiency Nutrients deficiency Stress Signals Stress Signals Sustainable production Sustainable production
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| GB/T 7714 | Muneer, Muhammad Atif , Afridi, Muhammad Siddique , Saddique, Muhammad Abu Bakar et al. Nutrient stress signals: Elucidating morphological, physiological, and molecular responses of fruit trees to macronutrients deficiency and their management strategies [J]. | SCIENTIA HORTICULTURAE , 2024 , 329 . |
| MLA | Muneer, Muhammad Atif et al. "Nutrient stress signals: Elucidating morphological, physiological, and molecular responses of fruit trees to macronutrients deficiency and their management strategies" . | SCIENTIA HORTICULTURAE 329 (2024) . |
| APA | Muneer, Muhammad Atif , Afridi, Muhammad Siddique , Saddique, Muhammad Abu Bakar , Chen, Xiaohui , Zaib-Un-Nisa , Yan, Xiaojun et al. Nutrient stress signals: Elucidating morphological, physiological, and molecular responses of fruit trees to macronutrients deficiency and their management strategies . | SCIENTIA HORTICULTURAE , 2024 , 329 . |
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为研究提升烟叶品质的最佳钾镁比例，通过田间随机区组试验，以农户常规施肥（T
Keyword ：
活性氧代谢 活性氧代谢 激素 激素 烤烟 烤烟 生物量 生物量 钾镁互作 钾镁互作
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| GB/T 7714 | 朱晨宇 , 谢榕榕 , 王月敏 et al. 钾镁肥优化对烤烟后期活性氧代谢和激素含量的影响 [J]. | 中国农学通报 , 2024 , 40 (25) : 24-29 . |
| MLA | 朱晨宇 et al. "钾镁肥优化对烤烟后期活性氧代谢和激素含量的影响" . | 中国农学通报 40 . 25 (2024) : 24-29 . |
| APA | 朱晨宇 , 谢榕榕 , 王月敏 , 徐志豪 , 柯玉琴 , 郑朝元 et al. 钾镁肥优化对烤烟后期活性氧代谢和激素含量的影响 . | 中国农学通报 , 2024 , 40 (25) , 24-29 . |
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High light (HL) significantly impacts plant photosynthesis. This study investigated the effects of different magnesium (Mg) levels (0, 1, 2, and 5 mol Mg plant-1; HMg0, HMg1, HMg2, and HMg5) on tobacco (Nicotiana tabacum L. cv. Cuibi No. 1) under HL (1500 mu mol m-2 s-1), aiming to understand the role of Mg in mitigating the impact of HL on photosynthesis and carbon-nitrogen metabolism. Plants treated with 1 mol Mg plant-1 under 750 mu mol m-2 s-1 light conditions served as the control. HL led to a reduced chlorophyll (Chl) content and inhibited the maximum photosynthetic rate (Pmax). It also decreased energy involved in photosynthetic electron transfer (ET) and electron flux to reduction end-electron acceptors at the photosystems I (PSI) acceptor side (RE) and caused photosynthetic system damage. H2O2 accumulation exacerbated membrane lipid peroxidation damage, disrupting carbon and nitrogen metabolism, and inducing antioxidant enzyme activity. HMg2 increased Chl content, stomatal conductance, intercellular CO2 concentration, and the net photosynthetic rate compared to HMg0. It enhanced ET efficiency, PSI and PSII functionality, reduced dissipated energy flux (DI), and minimized photosynthesis damage. Conversely, excessive Mg application (HMg5) decreased Pmax and PSII activity, increasing DI. Adequate Mg supply alleviated HL's detrimental effects by enhancing Chl content and ET and RE efficiency.
Keyword ：
carbon and nitrogen metabolism carbon and nitrogen metabolism high light intensity high light intensity magnesium deficiency magnesium deficiency photosynthetic fluorescence characteristic photosynthetic fluorescence characteristic
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| GB/T 7714 | Xie, Rongrong , Gao, Jingjuan , Yang, Zongfeng et al. Improving High Light Tolerance of Tobacco Plants: Adequate Magnesium Supply Enhances Photosynthetic Performance [J]. | AGRONOMY-BASEL , 2024 , 14 (7) . |
| MLA | Xie, Rongrong et al. "Improving High Light Tolerance of Tobacco Plants: Adequate Magnesium Supply Enhances Photosynthetic Performance" . | AGRONOMY-BASEL 14 . 7 (2024) . |
| APA | Xie, Rongrong , Gao, Jingjuan , Yang, Zongfeng , Wang, Yuemin , Tong, Liangyuan , Ke, Yuqin et al. Improving High Light Tolerance of Tobacco Plants: Adequate Magnesium Supply Enhances Photosynthetic Performance . | AGRONOMY-BASEL , 2024 , 14 (7) . |
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Excessive fertilization is recognized as a major contributor to agricultural greenhouse gas (GHG) emissions and soil acidification, resulting in adverse effects on crop yield and quality. Combining fertilizer optimization with soil acidity amendment can effectively achieve sustainable crop production in China, especially in Southeast China. However, there is a lack of long-term studies assessing economic and environmental sustainability of combining fertilizer optimization with soil acidity amendment strategies, especially in the fruit production. A four-year field experiment was conducted to explore pomelo yield, fruit quality, environmental and economic performance in three treatments, e.g., local farmer practices (FP), optimized NPK fertilizer application (OPT), and OPT with lime (OPT+L). Results showed that the OPT+L treatment exhibited the highest pomelo yield and fruit quality among three treatments, resulted in 101.7% and 17.6% higher net profits than in FP and OPT, respectively. OPT treatment had lowest net greenhouse gas emissions among three treatments, which 90.1% and 58.6% lower than in FP and OPT+L, respectively. Lime application increased pomelo yields and the benefits outweighing the associated costs. However, GHG emissions linked to lime production accounted for 40.7% of fertilizer production. Overall, these findings underscore the potential of OPT and OPT+L treatments in promoting environmentally friendly and generating higher net profits in pomelo production compared to the FP treatment at the county scale. Our study provides science-based evidence to support fruit farmers to achieve better environmental and economic performance through reduced NPK fertilization and alleviating soil acidification by lime. © 2023, The Authors. All rights reserved.
Keyword ：
Acidification Acidification Carbon footprint Carbon footprint Crops Crops Cultivation Cultivation Emission control Emission control Fertilizers Fertilizers Fruits Fruits Gas emissions Gas emissions Greenhouse gases Greenhouse gases Lime Lime Profitability Profitability Soils Soils Sustainable development Sustainable development
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| GB/T 7714 | Yan, Xiaojun , Ma, Yifei , Kong, Kunpeng et al. Mitigating Greenhouse Gas Emissions and Increasing Net Profits Via Optimized Fertilization Cooperated with Lime in Pomelo Fruit Production in Southeast China [J]. | SSRN , 2023 . |
| MLA | Yan, Xiaojun et al. "Mitigating Greenhouse Gas Emissions and Increasing Net Profits Via Optimized Fertilization Cooperated with Lime in Pomelo Fruit Production in Southeast China" . | SSRN (2023) . |
| APA | Yan, Xiaojun , Ma, Yifei , Kong, Kunpeng , Muneer, Muhammad Atif , Zhang, Lijun , Zhang, Yadong et al. Mitigating Greenhouse Gas Emissions and Increasing Net Profits Via Optimized Fertilization Cooperated with Lime in Pomelo Fruit Production in Southeast China . | SSRN , 2023 . |
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