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学者姓名：黄国强
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Abstract ：
本发明公开了一种快速鉴定甘蔗是否含有斑茅3号染色体的PCR引物、试剂盒及检测方法。所述PCR引物为TaChr03‑F/R，其核苷酸序列如SEQ ID NO:1~2所示，通过该PCR引物，只需采用普通的PCR技术即可快速检测甘蔗材料是否含有斑茅3号染色体。本发明的检测方法效率高、稳定性好、操作简便，具有很强实用性强和推广性。
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| GB/T 7714 | 邓祖湖 , 刘家睿 , 徐良年 et al. 一种快速鉴定甘蔗是否含有斑茅3号染色体的PCR引物、试剂盒及检测方法 : CN202510102827.1[P]. | 2025-01-22 . |
| MLA | 邓祖湖 et al. "一种快速鉴定甘蔗是否含有斑茅3号染色体的PCR引物、试剂盒及检测方法" : CN202510102827.1. | 2025-01-22 . |
| APA | 邓祖湖 , 刘家睿 , 徐良年 , 赵新旺 , 李雪停 , 黄国强 . 一种快速鉴定甘蔗是否含有斑茅3号染色体的PCR引物、试剂盒及检测方法 : CN202510102827.1. | 2025-01-22 . |
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本发明公开了一种快速鉴定甘蔗是否含有斑茅2号染色体的PCR引物、试剂盒及检测方法。所述PCR引物为TaChr02‑F/R，其核苷酸序列如SEQ ID NO:1~2所示，通过该PCR引物，只需采用普通的PCR技术即可快速检测甘蔗材料是否含有斑茅2号染色体。本发明的检测方法效率高、稳定性好、操作简便，具有很强实用性强和推广性。
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| GB/T 7714 | 邓祖湖 , 徐良年 , 赵新旺 et al. 一种快速鉴定甘蔗是否含有斑茅2号染色体的PCR引物、试剂盒及检测方法 : CN202510103245.5[P]. | 2025-01-22 . |
| MLA | 邓祖湖 et al. "一种快速鉴定甘蔗是否含有斑茅2号染色体的PCR引物、试剂盒及检测方法" : CN202510103245.5. | 2025-01-22 . |
| APA | 邓祖湖 , 徐良年 , 赵新旺 , 黄国强 , 李雪停 , 黄潮华 . 一种快速鉴定甘蔗是否含有斑茅2号染色体的PCR引物、试剂盒及检测方法 : CN202510103245.5. | 2025-01-22 . |
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Sugarcane mosaic disease, primarily caused by sugarcane mosaic virus (SCMV), seriously affects sugarcane production. The 6K2 protein is crucial for potyvirus infection. Calnexin (CNX) and calreticulin (CRT) play key roles in plants growth, development, and response to stresses. However, the CRT and CNX families have not been studied in sugarcane. Here, we screened CNX from a sugarcane cDNA yeast library with 6K2 of SCMV as bait. We identified 65 ScCRTs and 11 ScCNXs from the sugarcane cultivar XTT22, which were phylogenetically classified into three groups. The promoter regions of these genes contain multiple cis-elements related to growth and development, environmental stress, plant hormone responses, and light responses. Transcriptomic analysis revealed differential spatiotemporal expression of ScCRTs and ScCNXs. We cloned four CRT and one CNX genes from XTT22, which localized to the endoplasmic reticulum. ScCNX1-1 was differentially expressed in sugarcane tissues and was upregulated upon SCMV infection. Protein-protein assays demonstrated that only ScCNX1-1 interacts with SCMV-6K2. Transient expression of ScCNX1-1 in Nicotiana benthamiana suppressed turnip mosaic virus (TuMV) infection. Moreover, all four CNXs, but not the CRTs from N. benthamiana, interacted with TuMV-6K2. Transient NbCNX silencing inhibited TuMV infection. These findings indicate that the interaction of CNX with 6K2 is a conserved mechanism for potyvirus infection, and that CNX expression is fine-tuned and tightly controlled upon viral infection. This study sheds light on the roles of ScCRT and ScCNX genes in sugarcane growth, development, and response to stresses, and provides a potential molecular target for engineering SCMV resistance in sugarcane.
Keyword ：
Calnexin Calnexin Calreticulin Calreticulin N. benthamiana N. benthamiana Potyvirus Potyvirus Sugarcane mosaic virus Sugarcane mosaic virus
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| GB/T 7714 | Liu, Haoming , Li, Yifei , Zhan, Zhenhe et al. Identification of calreticulin and calnexin gene families in sugarcane and mechanistic elucidation of their roles in response to SCMV infection [J]. | PLANT STRESS , 2025 , 18 . |
| MLA | Liu, Haoming et al. "Identification of calreticulin and calnexin gene families in sugarcane and mechanistic elucidation of their roles in response to SCMV infection" . | PLANT STRESS 18 (2025) . |
| APA | Liu, Haoming , Li, Yifei , Zhan, Zhenhe , Zhang, Hai , Yang, Zongtao , Yu, Quanxin et al. Identification of calreticulin and calnexin gene families in sugarcane and mechanistic elucidation of their roles in response to SCMV infection . | PLANT STRESS , 2025 , 18 . |
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Sugarcane (Saccharum spp.), a vital economic crop, suffers significant yield losses from drought. This study elucidates the genetic regulation of lignin biosynthesis-a key drought-resistance mechanism-by analyzing three contrasting accessions: drought-sensitive Saccharum officinarum (Badila), drought-resistant hybrid (XTT22), and drought-tolerant wild Saccharum spontaneum (SES-208) under progressive drought (7-21 days). Physiological analyses revealed pronounced lignin accumulation in XTT22 roots/leaves, driven by elevated coniferyl/sinapyl alcohol substrates, while Badila showed minimal deposition. Genomic characterization of cinnamyl/sinapyl alcohol dehydrogenase (CAD/SAD) families across six sugarcane genomes identified 322 genes phylogenetically clustered into three clades. Class I members (CAD1, CAD5, etc.) were critical for lignin biosynthesis, with tandem/segmental duplications driving family expansion and promoters enriched in stress-responsive cis-elements (ABA, MeJA, light). Transcriptomics and qRT-PCR confirmed strong correlations between Class I CAD expression, lignin content, and drought tolerance. These findings establish CAD Class I genes as novel molecular targets for enhancing drought resilience in sugarcane breeding programs.
Keyword ：
CAD phylogenetic clades CAD phylogenetic clades drought resistance drought resistance lignin precursor regulation lignin precursor regulation molecular breeding molecular breeding Saccharum spp. Saccharum spp.
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| GB/T 7714 | Wang, Yue , Zhao, Weitong , Li, Peiting et al. Lignin Biosynthesis Driven by CAD Genes Underpins Drought Tolerance in Sugarcane: Genomic Insights for Crop Improvement [J]. | PLANTS-BASEL , 2025 , 14 (17) . |
| MLA | Wang, Yue et al. "Lignin Biosynthesis Driven by CAD Genes Underpins Drought Tolerance in Sugarcane: Genomic Insights for Crop Improvement" . | PLANTS-BASEL 14 . 17 (2025) . |
| APA | Wang, Yue , Zhao, Weitong , Li, Peiting , Zhao, Junjie , Yang, Zhiwei , Huang, Chaohua et al. Lignin Biosynthesis Driven by CAD Genes Underpins Drought Tolerance in Sugarcane: Genomic Insights for Crop Improvement . | PLANTS-BASEL , 2025 , 14 (17) . |
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Cold stress is a critical environmental factor adversely affecting plant growth and development. As a tropical-origin crop constituting the primary global source of sucrose, sugarcane (Saccharum spp. hybrid) exhibits particular vulnerability to suboptimal temperature conditions, with chilling injury substantially compromising its yield potential. Despite its agricultural significance, the molecular mechanisms underlying cold acclimation in sugarcane remain poorly characterized. Here, we report a cold-repressed 1R-MYB gene, ScMYB7, from sugarcane, whose promoter (pro-ScMYB7) contains multiple cis-acting elements, including two cytosine-phosphate diester-guanine (CpG) islands. Bisulfite sequencing PCR (BSP) and qPCR results showed that low-temperature treatment increased the methylation level of the CpG islands in the promoter to reduce the transcription of the ScMYB7 gene. The outcomes of GUS enzyme activity measurement of the promoter also indicated that low-temperature treatment inhibits the promoter's transcriptional activity, and methylation inhibitors could alleviate this inhibition. By generating transgenic Arabidopsis lines overexpressing ScMYB7, ScMYB7's roles in regulating cold tolerance were investigated. We observed that the transgenic plants reduced cold tolerance, featured by a decreased survival rate after recovery, fluctuated physiological traits, and significantly lower expression levels of the C-repeat binding factor (CBF)-dependent pathway genes (AtCBFs, AtCOR15, and AtRD29A). Yeast one-hybrid assays demonstrated direct binding of ScMYB7 to the AtCBF1 promoter, while repression of sugarcane ScDREB1A occurred indirectly. Furthermore, the dual-luciferase reporter assay indicated that ScMYB7 was able to inhibit the expression of the AtCBF1 or ScDREB1A. Taken together, we propose a model in which ScMYB7 acts as a repressor of cold tolerance via the CBF-dependent pathway. Under low-temperature stress, increased methylation of the pro-ScMYB7 promoter reduces ScMYB7 expression, thereby alleviating its repression of sugarcane DREB/CBF-type transcription factors and enhancing cold adaptation.
Keyword ：
CBF-dependent pathway CBF-dependent pathway cold tolerance cold tolerance MYB transcription factor MYB transcription factor promoter methylation promoter methylation sugarcane sugarcane
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| GB/T 7714 | Liu, Weiwei , Ou, Qiuyue , Feng, Meichang et al. Cold-Induced Promoter Methylation Attenuates ScMYB7-Mediated Repression of the CBF Pathway: A Proposed Mechanism for Sugarcane Cold Adaptation [J]. | PLANT CELL AND ENVIRONMENT , 2025 , 48 (12) : 8973-8984 . |
| MLA | Liu, Weiwei et al. "Cold-Induced Promoter Methylation Attenuates ScMYB7-Mediated Repression of the CBF Pathway: A Proposed Mechanism for Sugarcane Cold Adaptation" . | PLANT CELL AND ENVIRONMENT 48 . 12 (2025) : 8973-8984 . |
| APA | Liu, Weiwei , Ou, Qiuyue , Feng, Meichang , Li, Yue , Huang, Linghan , Peng, Xuan et al. Cold-Induced Promoter Methylation Attenuates ScMYB7-Mediated Repression of the CBF Pathway: A Proposed Mechanism for Sugarcane Cold Adaptation . | PLANT CELL AND ENVIRONMENT , 2025 , 48 (12) , 8973-8984 . |
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Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is one of the key enzymes of glycolysis and plays important roles in plant growth, development and plant-pathogen interactions. However, studies on the characteristics and functions of sugarcane (Saccharum spp. hybrid) GAPDH family genes are still lacking. In the present study, 24, 75 and 91 GAPDH genes were identified in Saccharum spontaneum and sugarcane cultivars R570 and XTT22, respectively. A phylogenetic tree revealed that these genes could be divided into four groups, i. e., the GAPC group, the GAPA group, the GAPB group and the GAPCp group. These GAPDH genes contained multiple cis-acting elements related to stress and hormone response. RNA-seq analysis demonstrated that the S. spontaneum GAPDH genes and XTT22-GAPDH genes were constitutively expressed at different developmental stages or in different tissues. ScGAPA, ScGAPB, ScGAPC and ScGAPCp, representatives of each group of the GAPDH family, were isolated from the sugarcane cultivar XTT22. RT-qPCR analysis revealed that the expression levels of ScGAPA and ScGAPB were exponentially greater than those of ScGAPC or ScGAPCp in the leaves; these four genes were differentially expressed upon SCMV infection and after abiotic treatments such as NaCl, salicylic acid, H2O2 or MeJA. DAB staining and detection of ATG8-I and ATG8-II demonstrated that SCMV infection induces bursts of reactive oxygen species and autophagy in sugarcane leaves. ScGAPA, ScGAPB, ScGAPC, and ScGAPCp interacted with ScATG3, thereby suppressing autophagy in Nicotiana benthamiana plants. However, oxidative stress impaired the interaction of ScATG3 with ScGAPA, ScGAPB, ScGAPC and ScGAPCp, indicating that SCMV infection activates autophagy by disrupting ScGAPDH-ScATG3 interactions. The present study reveals the origin and evolution of the GAPDH gene family in sugarcane and the potential roles of this gene family in response to sugarcane mosaic virus (SCMV) infection.
Keyword ：
Autophagy Autophagy GAPDH GAPDH ROS ROS SCMV SCMV Sugarcane Sugarcane
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| GB/T 7714 | Yang, Zongtao , Zeng, Kang , Zhan, Zhenhe et al. Molecular identification of sugarcane glyceraldehyde-3-phosphate dehydrogenases and their involvement in SCMV infection in sugarcane [J]. | INDUSTRIAL CROPS AND PRODUCTS , 2025 , 232 . |
| MLA | Yang, Zongtao et al. "Molecular identification of sugarcane glyceraldehyde-3-phosphate dehydrogenases and their involvement in SCMV infection in sugarcane" . | INDUSTRIAL CROPS AND PRODUCTS 232 (2025) . |
| APA | Yang, Zongtao , Zeng, Kang , Zhan, Zhenhe , Yu, Quanxin , Jiao, Wendi , Luo, Tingxu et al. Molecular identification of sugarcane glyceraldehyde-3-phosphate dehydrogenases and their involvement in SCMV infection in sugarcane . | INDUSTRIAL CROPS AND PRODUCTS , 2025 , 232 . |
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Introduction Sugarcane mosaic virus (SCMV, Potyvirus) causes mosaic diseases and seriously threatens sugarcane production. Potyviral 6K2 protein plays a key role in viral infections. We previously screened a tetraspanin (TET)-like protein that interacts with SCMV-6K2 from a sugarcane cDNA yeast library. Although TETs have been extensively studied in response to viral infections in animals, the TET gene family in sugarcane and its role in SCMV infections remain largely unknown. This study aimed to identify the TET genes in sugarcane and determine their response to SCMV infection.Methods We employed genome-wide identification, phylogenetic analysis, real-time quantitative PCR (RT-qPCR), subcellular localization, and multiple protein-protein interaction assays to characterize TETs and their interactions with viral 6K2 proteins.Results We identified 35, 113, 73, and 17 TETs in the genomes of Saccharum spontaneum, sugarcane cultivar R570, sugarcane cultivar Xintaitang 22 (XTT22), and Nicotiana benthamiana, respectively. Phylogenetic tree analysis classified the TETs into nine distinct groups. Nine TET genes were cloned from XTT22 and designated ScTET2, ScTET8, ScTET13, ScTET23, ScTET34, ScTET55, ScTET67, ScTET78, and ScTET96. RT-qPCR demonstrated the differential expression of these genes following SCMV infection. Furthermore, subcellular localization assays revealed that they were mainly localized to the plasma membrane (PM), except for ScTET2 and ScTET8, which were localized in the cytoplasm and formed irregular spherical structures of different sizes. Yeast two-hybrid (Y2H), bimolecular fluorescent complementation, and luciferase complementation assays revealed extensive interactions between the ScTETs and SCMV-6K2, primarily in the PM. Y2H assays also showed that TETs of Arabidopsis and N. benthamiana extensively interacted with the 6K2 protein of turnip mosaic virus.Discussion This study reveals a potential mechanism by which potyviruses employ 6K2 to interact with TETs to establish infection in host plants, thus highlighting potential molecular targets for engineering sugarcane resistance against SCMV.
Keyword ：
potyvirus potyvirus sugarcane sugarcane sugarcane mosaic virus sugarcane mosaic virus tetraspanin tetraspanin
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| GB/T 7714 | Cui, Zhiyuan , Li, Yifei , Zeng, Kang et al. Identification of the tetraspanin gene family in sugarcane and its response to sugarcane mosaic virus infection [J]. | FRONTIERS IN PLANT SCIENCE , 2025 , 16 . |
| MLA | Cui, Zhiyuan et al. "Identification of the tetraspanin gene family in sugarcane and its response to sugarcane mosaic virus infection" . | FRONTIERS IN PLANT SCIENCE 16 (2025) . |
| APA | Cui, Zhiyuan , Li, Yifei , Zeng, Kang , Yang, Zongtao , Yu, Quanxin , Liu, Haoming et al. Identification of the tetraspanin gene family in sugarcane and its response to sugarcane mosaic virus infection . | FRONTIERS IN PLANT SCIENCE , 2025 , 16 . |
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Introduction: Remorins (REMs) are plant-specific membrane-associated proteins that play important roles in plant-pathogen interactions and environmental adaptations. Group I REMs are extensively involved in virus infection. However, little is known about the REM gene family in sugarcane (Saccharum spp. hyrid), the most important sugar and energy crop around world. Methods: Comparative genomics were employed to analyze the REM gene family in Saccharum spontaneum. Transcriptomics or RT-qPCR were used to analyze their expression files in different development stages or tissues under different treatments. Yeast two hybrid, bimolecular fluorescence complementation and co-immunoprecipitation assays were applied to investigate the protein interaction. Results: In this study, 65 REMs were identified from Saccharum spontaneum genome and classified into six groups based on phylogenetic tree analysis. These REMs contain multiple cis-elements associated with growth, development, hormone and stress response. Expression profiling revealed that among different SsREMs with variable expression levels in different developmental stages or different tissues. A pair of alleles, ScREM1.5e-1/-2, were isolated from the sugarcane cultivar ROC22. ScREM1.5e-1/-2 were highly expressed in leaves, with the former expressed at significantly higher levels than the latter. Their expression was induced by treatment with H2O2, ABA, ethylene, brassinosteroid, SA or MeJA, and varied upon Sugarcane mosaic virus (SCMV) infection. ScREM1.5e-1 was localized to the plasma membrane (PM), while ScREM1.5e-2 was localized to the cytoplasm or nucleus. ScREM1.5e-1/-2 can self-interact and interact with each other, and interact with VPgs from SCMV, Sorghum mosaic virus, or Sugarcane streak mosaic virus. The interactions with VPgs relocated ScREM1.5e-1 from the PM to the cytoplasm. Discussion: These results reveal the origin, distribution and evolution of the REM gene family in sugarcane and may shed light on engineering sugarcane resistance against sugarcane mosaic pathogens.
Keyword ：
gene family gene family Remorin Remorin sugarcane sugarcane virus virus VPg VPg
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| GB/T 7714 | Yang, Zongtao , Cheng, Guangyuan , Yu, Quanxin et al. Identification and characterization of the Remorin gene family in Saccharum and the involvement of ScREM1.5e-1/-2 in SCMV infection on sugarcane [J]. | FRONTIERS IN PLANT SCIENCE , 2024 , 15 . |
| MLA | Yang, Zongtao et al. "Identification and characterization of the Remorin gene family in Saccharum and the involvement of ScREM1.5e-1/-2 in SCMV infection on sugarcane" . | FRONTIERS IN PLANT SCIENCE 15 (2024) . |
| APA | Yang, Zongtao , Cheng, Guangyuan , Yu, Quanxin , Jiao, Wendi , Zeng, Kang , Luo, Tingxu et al. Identification and characterization of the Remorin gene family in Saccharum and the involvement of ScREM1.5e-1/-2 in SCMV infection on sugarcane . | FRONTIERS IN PLANT SCIENCE , 2024 , 15 . |
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The sucrose yield in sugarcane largely depends on stem morphology, including length, diameter and sugar content, making sugarcane stem a key trait in breeding. The "Bainianzhe" variety from Songxi County, Fujian Province, possesses both aerial stems and rhizomes, providing a unique model for studying stem development. We performed a spatiotemporal transcriptomic analysis of the base, middle and apical sections of both aerial stems and rhizomes. The analysis categorized transcriptomes by developmental stage-base, middle and apical-rather than environmental differences. Apical segments were enriched with genes related to cell proliferation, while base segments were linked to senescence and fibrosis. Gene regulatory networks revealed key TFs involved in stem development. Orphan genes may be involved in rhizome development through coexpression networks. Plant hormones, especially genes involved in ABA and GAs synthesis, were highly expressed in rhizomes. Thiamine-related genes were also more prevalent in rhizomes. Furthermore, the apical segments of rhizomes enriched in photosynthesis-related genes suggest adaptations to light exposure. Low average temperatures in Songxi have led to unique cold acclimation in Bainianzhe, with rhizomes showing higher expression of genes linked to unsaturated fatty acid synthesis and cold-responsive calcium signalling. This indicates that rhizomes may have enhanced cold tolerance, aiding in the plant's overwintering success.
Keyword ：
aerial stems aerial stems Bainianzhe Bainianzhe orphan genes orphan genes rhizomes rhizomes sugarcane sugarcane transcriptome transcriptome
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| GB/T 7714 | Li, Peiting , Yang, Ruiting , Liu, Jiarui et al. Coexpression Regulation of New and Ancient Genes in the Dynamic Transcriptome Landscape of Stem and Rhizome Development in "Bainianzhe"-An Ancient Chinese Sugarcane Variety Ratooned for Nearly 300 Years [J]. | PLANT CELL AND ENVIRONMENT , 2024 , 48 (2) : 1621-1642 . |
| MLA | Li, Peiting et al. "Coexpression Regulation of New and Ancient Genes in the Dynamic Transcriptome Landscape of Stem and Rhizome Development in "Bainianzhe"-An Ancient Chinese Sugarcane Variety Ratooned for Nearly 300 Years" . | PLANT CELL AND ENVIRONMENT 48 . 2 (2024) : 1621-1642 . |
| APA | Li, Peiting , Yang, Ruiting , Liu, Jiarui , Huang, Chaohua , Huang, Guoqiang , Deng, Zuhu et al. Coexpression Regulation of New and Ancient Genes in the Dynamic Transcriptome Landscape of Stem and Rhizome Development in "Bainianzhe"-An Ancient Chinese Sugarcane Variety Ratooned for Nearly 300 Years . | PLANT CELL AND ENVIRONMENT , 2024 , 48 (2) , 1621-1642 . |
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本发明公开了一套甘蔗品种真实性检测SNP标记及应用，包括177个核心SNP标记，SNP标记符合下述条件：F_MISSING≤0.3||MAF≥0.05，QUAL≥30.0||QD≥2.0||FS≤60.0||MQ≥40.0||SOR≤4.0条件；hwe平衡常数p≥0.01；均匀分布在甘蔗各染色体上且该位点上下100bp没有其他变异位点；采用LDR多重SNP分型试剂盒进行标记开发，能够转化成果的位点。本发明的优点：该套SNP标记组合建立DNA指纹图谱库，从而可以对甘蔗品种进行聚类分析和品种鉴定，使得检测结果更精准、高效；该套SNP标记稳定性好，均匀分布在甘蔗的80条染色体上，具有较好的可重复性；基于LDR技术的SNP引物组合在DNA质量满足常规PCR反应需求的情况下，对甘蔗品种检测的准确度和分辨率均很高，检测效率是SSR标记的10‑20倍，检测成本与SSR标记相当，检测过程更加快速、通量更高，同时检测过程中无需使用丙烯酰胺等有毒化学试剂，安全性高、环境友好。
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| GB/T 7714 | 赵新旺 , 赵薇彤 , 邓祖湖 et al. 一套甘蔗品种真实性检测SNP标记及应用 : CN202410647596.8[P]. | 2024-05-23 . |
| MLA | 赵新旺 et al. "一套甘蔗品种真实性检测SNP标记及应用" : CN202410647596.8. | 2024-05-23 . |
| APA | 赵新旺 , 赵薇彤 , 邓祖湖 , 张木清 , 徐良年 , 黄国强 et al. 一套甘蔗品种真实性检测SNP标记及应用 : CN202410647596.8. | 2024-05-23 . |
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