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学者姓名：杨永庆
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Abstract ：
Phosphorus (P) is an essential element for all organisms. Because P fertilizers are a non-renewable resource and high fixation in soils, sustainable agriculture requires researchers to improve crop P acquisition efficiency. Here, we report a strong association signal at a locus of CPU1 (component of phosphorus uptake 1), from a genome-wide association study of P acquisition efficiency in a soybean core collection grown in the field. A SEC12-like gene, GmPHF1, is identified as the causal gene for CPU1. GmPHF1 facilitates the ER (endoplasmic reticulum) exit of the phosphate transporter, GmPT4, to the plasma membrane of root epidermal cells. A common SNP in an upstream open reading frame (uORF) of GmPHF1, which alters the abundance of GmPHF1 in a tissue-specific manner, contributes to P acquisition diversity in soybean. A natural genetic variation conditions diversity in soybean P acquisition, which can be used to develop P-efficient soybean genotypes. Improving phosphorus (P) acquisition efficiency is important for sustainable agriculture. Here, the authors report a natural variation in an upstream open reading frame of a SEC12-like gene GmPHF1 is crucial for protein abundance and spatial distribution of GmPHF1, which contribute to P acquisition diversity in soybean.
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| GB/T 7714 | Guo, Zilong , Cao, Hongrui , Zhao, Jing et al. A natural uORF variant confers phosphorus acquisition diversity in soybean [J]. | NATURE COMMUNICATIONS , 2022 , 13 (1) . |
| MLA | Guo, Zilong et al. "A natural uORF variant confers phosphorus acquisition diversity in soybean" . | NATURE COMMUNICATIONS 13 . 1 (2022) . |
| APA | Guo, Zilong , Cao, Hongrui , Zhao, Jing , Bai, Shuang , Peng, Wenting , Li, Jian et al. A natural uORF variant confers phosphorus acquisition diversity in soybean . | NATURE COMMUNICATIONS , 2022 , 13 (1) . |
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Legume biological nitrogen fixation (BNF) is the most important N source in agricultural ecosystems. Nodule organogenesis from the primordia to the development of mature nodules with the ability to fix N-2 largely determines BNF capacity. However, nodule growth is often limited by low phosphorus (P) availability, while the mechanisms underlying nodule development responses to P deficiency remain largely unknown. In this study, we found that nodule enlargement is severely inhibited by P deficiency, as reflected by the smaller individual nodule size from a soybean core collection in the field. Wide-ranging natural diversity in nodule size was further identified in soybeans reared in low P soils, with the FC-1 genotype outperforming FC-2 in assessments of nodulation under low P conditions. Among beta-expansin members, GmINS1 expression is most abundantly enhanced by P deficiency in FC-1 nodules, and its transcript level is further displayed to be tightly associated with nodule enlargement. Four single nucleotide polymorphisms discovered in the GmINS1 promoter distinguished the FC-1 and FC-2 genotypes and accounted for the differential expression levels of GmINS1 responses to P deficiency. GmINS1 overexpression led to increases in nodule size, infected cell abundance, and N-2 fixation capacity and subsequently promoted increases in N and P content, soybean biomass, and yield. Our findings provide a candidate gene for optimizing BNF capacity responses to low P stress in soybean molecular breeding programs.
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| GB/T 7714 | Yang, Zhaojun , Zheng, Jiakun , Zhou, Huiwen et al. The soybean β-expansin gene GmINS1 contributes to nodule development in response to phosphate starvation [J]. | PHYSIOLOGIA PLANTARUM , 2021 , 172 (4) : 2034-2047 . |
| MLA | Yang, Zhaojun et al. "The soybean β-expansin gene GmINS1 contributes to nodule development in response to phosphate starvation" . | PHYSIOLOGIA PLANTARUM 172 . 4 (2021) : 2034-2047 . |
| APA | Yang, Zhaojun , Zheng, Jiakun , Zhou, Huiwen , Chen, Shengnan , Gao, Zhi , Yang, Yongqing et al. The soybean β-expansin gene GmINS1 contributes to nodule development in response to phosphate starvation . | PHYSIOLOGIA PLANTARUM , 2021 , 172 (4) , 2034-2047 . |
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Root-associated microbes are critical for plant growth and nutrient acquisition. However, scant information exists on optimizing communities of beneficial root-associated microbes or the mechanisms underlying their interactions with host plants. In this report, we demonstrate that root-associated microbes are critical influencers of host plant growth and nutrient acquisition. Three synthetic communities (SynComs) were constructed based on functional screening of 1,893 microbial strains isolated from root-associated compartments of soybean plants. Functional assemblage of SynComs promoted significant plant growth and nutrient acquisition under both N/P nutrient deficiency and sufficiency conditions. Field trials further revealed that application of SynComs stably and significantly promoted plant growth, facilitated N and P acquisition, and subsequently increased soybean yield. Among the tested communities, SynCom1 exhibited the greatest promotion effect, with yield increases of up to 36.1% observed in two field sites. Further RNA-seq implied that SynCom application systemically regulates N and P signaling networks at the transcriptional level, which leads to increased representation of important growth pathways, especially those related to auxin responses. Overall, this study details a promising strategy for constructing SynComs based on functional screening, which are capable of enhancing nutrient acquisition and crop yield through the activities of beneficial root-associated microbes.
Keyword ：
associated microbes associated microbes growth promotion growth promotion nitrogen nitrogen phosphorus phosphorus root‐ root‐ soybean soybean SynCom SynCom
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| GB/T 7714 | Wang, Cunhu , Li, Yanjun , Li, Mingjia et al. Functional assembly of root-associated microbial consortia improves nutrient efficiency and yield in soybean [J]. | JOURNAL OF INTEGRATIVE PLANT BIOLOGY , 2021 , 63 (6) : 1021-1035 . |
| MLA | Wang, Cunhu et al. "Functional assembly of root-associated microbial consortia improves nutrient efficiency and yield in soybean" . | JOURNAL OF INTEGRATIVE PLANT BIOLOGY 63 . 6 (2021) : 1021-1035 . |
| APA | Wang, Cunhu , Li, Yanjun , Li, Mingjia , Zhang, Kefei , Ma, Wenjing , Zheng, Lei et al. Functional assembly of root-associated microbial consortia improves nutrient efficiency and yield in soybean . | JOURNAL OF INTEGRATIVE PLANT BIOLOGY , 2021 , 63 (6) , 1021-1035 . |
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Background Shoot architecture is fundamentally crucial to crop growth and productivity. As a key component of shoot architecture, plant height is known to be controlled by both genetic and environmental factors, though specific details remain scarce. Results In this study, 308 representative soybean lines from a core collection and 168 F-9 soybean progeny were planted at distinct field sites. The results demonstrated the presence of significant genotype x environment interaction (G x E) effects on traits associated with plant height in a natural soybean population. In total, 19 loci containing 51 QTLs (quantitative trait locus) for plant height were identified across four environments, with 23, 13 and 15 being QTLs for SH (shoot height), SNN (stem node number) and AIL (average internode length), respectively. Significant LOD ranging from 2.50 to 16.46 explained 2.80-26.10% of phenotypic variation. Intriguingly, only two loci, Loc11 and Loc19-1, containing 20 QTLs, were simultaneously detected across all environments. Results from Pearson correlation analysis and PCA (principal component analysis) revealed that each of the five agro-meteorological factors and four soil properties significantly affected soybean plant height traits, and that the corresponding QTLs had additive effects. Among significant environmental factors, AD (average day-length), AMaT (average maximum temperature), pH, and AN (available nitrogen) had the largest impacts on soybean plant height. Therefore, in spite of uncontrollable agro-meteorological factors, soybean shoot architecture might be remolded through combined efforts to produce superior soybean genetic materials while also optimizing soil properties. Conclusions Overall, the comprehensive set of relationships outlined herein among environment factors, soybean genotypes and QTLs in effects on plant height opens new avenues to explore in work aiming to increase soybean yield through improvements in shoot architecture.
Keyword ：
Agro-meteorological factors Agro-meteorological factors Genotype Genotype Plants height Plants height QTLs QTLs Shoot architecture Shoot architecture Soil properties Soil properties
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| GB/T 7714 | Yang, Qing , Lin, Gaoming , Lv, Huiyong et al. Environmental and genetic regulation of plant height in soybean [J]. | BMC PLANT BIOLOGY , 2021 , 21 (1) . |
| MLA | Yang, Qing et al. "Environmental and genetic regulation of plant height in soybean" . | BMC PLANT BIOLOGY 21 . 1 (2021) . |
| APA | Yang, Qing , Lin, Gaoming , Lv, Huiyong , Wang, Cunhu , Yang, Yongqing , Liao, Hong . Environmental and genetic regulation of plant height in soybean . | BMC PLANT BIOLOGY , 2021 , 21 (1) . |
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Developing high yielding cultivars with outstanding quality traits are perpetual objectives throughout crop breeding operations. Confoundingly, both of these breeding objectives typically involve working with complex quantitative traits that can be affected by genetic and environmental factors. Establishing correlations of these complex traits with more easily identifiable and highly heritable traits can simplify breeding processes. In this study, two parental soybean genotypes contrasting in seed hilum size, yield, and seed quality, as well as 175 F-9 recombinant inbred lines (RILs) derived from these parents, were grown in 3 years. The h(b)(2) of four hilum size, two quality and two yield traits, ranged from 0.72 to 0.87. The four observed hilum size traits exhibited significant correlation (P < 0.05) with most of seed yield and quality traits, as indicated by correlation coefficients varying from -0.35 to 0.42, which suggests that hilum size could be considered as a proxy trait for soybean yield and quality. Interestingly, among 53 significant quantitative trait loci (QTLs) with logarithm of odds (LOD) values ranging from 2.51 to 6.69 and accounting for 6.40-16.10% of genetic variation, three loci encoding hilum size, qSH6.2, qSH8, and qSH10, colocated with QTLs for seed yield and quality traits, demonstrating that genes impacting seed hilum size colocalize in part with genes acting on soybean yield and quality. As a result of the breeding efforts and field observations described in this work, it is reasonable to conclude that optimizing hilum size through selection focused on a few QTLs may be useful for breeding new high yielding soybean varieties with favorable quality characteristics.
Keyword ：
breeding breeding genetic effects genetic effects QTL QTL seed hilum size seed hilum size seed quality seed quality seed yield seed yield
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| GB/T 7714 | Zhao, Qingsong , Shi, Xiaolei , Yan, Long et al. Characterization of the Common Genetic Basis Underlying Seed Hilum Size, Yield, and Quality Traits in Soybean [J]. | FRONTIERS IN PLANT SCIENCE , 2021 , 12 . |
| MLA | Zhao, Qingsong et al. "Characterization of the Common Genetic Basis Underlying Seed Hilum Size, Yield, and Quality Traits in Soybean" . | FRONTIERS IN PLANT SCIENCE 12 (2021) . |
| APA | Zhao, Qingsong , Shi, Xiaolei , Yan, Long , Yang, Chunyan , Liu, Cong , Feng, Yan et al. Characterization of the Common Genetic Basis Underlying Seed Hilum Size, Yield, and Quality Traits in Soybean . | FRONTIERS IN PLANT SCIENCE , 2021 , 12 . |
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The classical soybean (Glycine max) trait long juvenile (LJ) is essentially a reduction in sensitivity to short-day (SD) conditions for induction and completion of flowering, and has been introduced into soybean cultivars to improve yield in tropical environments. However, only one locus, J, is known to confer LJ in low-latitude varieties. Here, we defined two quantitative trait loci contributing to the LJ trait, LJ16.1 and LJ16.2, and identified them as the florigen (FT) homologs FT2a and FT5a, respectively. The two selected florigen variations both delay flowering time under SD conditions by repressing the floral meristem identity gene GmAPETALA1. Single mutants have a relatively subtle effect on flowering time and displayed a substantial genetic compensation response, but this was absent in ft2a ft5a double mutants, which showed an enhanced LJ phenotype that translated to higher yields under SD conditions. A survey of sequence diversity suggests that FT2a and FT5a variants have diverse origins and have played distinct roles as soybean spread to lower latitudes. Our results show that integration of variants in the florigen genes offers a strategy for customizing flowering time to adjust adaptation and improve crop productivity in tropical regions.
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| GB/T 7714 | Li, Xiaoming , Fang, Chao , Yang, Yongqing et al. Overcoming the genetic compensation response of soybean florigens to improve adaptation and yield at low latitudes [J]. | CURRENT BIOLOGY , 2021 , 31 (17) : 3755-, . |
| MLA | Li, Xiaoming et al. "Overcoming the genetic compensation response of soybean florigens to improve adaptation and yield at low latitudes" . | CURRENT BIOLOGY 31 . 17 (2021) : 3755-, . |
| APA | Li, Xiaoming , Fang, Chao , Yang, Yongqing , Lv, Tianxiao , Su, Tong , Chen, Liyu et al. Overcoming the genetic compensation response of soybean florigens to improve adaptation and yield at low latitudes . | CURRENT BIOLOGY , 2021 , 31 (17) , 3755-, . |
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为探究接种根瘤菌环境下影响大豆叶形的遗传基础,本研究利用两个叶形具有显著差异的大豆品种及RIL群体,在接种和不接种根瘤菌环境下对大豆叶形性状进行遗传和QTL定位等分析。结果显示,叶形相关性状的遗传率在0.60～0.95之间,环境与基因型间存在互作效应,并且接种根瘤菌可以显著影响叶形指数(LS)与单株粒数(GN)、单株荚数(PD)和单株粒重(GW)的相关系数。此外,两种处理下共检测到8个QTL位点,LOD值范围在2.50～7.03,可解释6.4%～16.9%的遗传变异。其中,qLS-15可解释由根瘤菌×基因型互作引起叶形性状6.4%～9.3%的遗传变异,LOD值在2.50～3.69之间,表明qLS-15是与环境互作的主要遗传位点之一。综上所述,根瘤菌可以通过qLS-15影响大豆叶形,研究结果为解析根瘤菌提升大豆产量的内在机制提供了理论依据。
Keyword ：
QTL定位 QTL定位 大豆叶形 大豆叶形 根瘤菌 根瘤菌 遗传互作 遗传互作
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| GB/T 7714 | 杨永庆 , 陈圣男 , 李欣欣 et al. 接种根瘤菌环境下大豆叶形遗传及QTL定位分析 [J]. | 中国油料作物学报 , 2021 , 43 (05) : 825-833 . |
| MLA | 杨永庆 et al. "接种根瘤菌环境下大豆叶形遗传及QTL定位分析" . | 中国油料作物学报 43 . 05 (2021) : 825-833 . |
| APA | 杨永庆 , 陈圣男 , 李欣欣 , 赵青松 , 付亚书 , 杨春燕 et al. 接种根瘤菌环境下大豆叶形遗传及QTL定位分析 . | 中国油料作物学报 , 2021 , 43 (05) , 825-833 . |
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Rhizosphere microorganisms play important roles in plant health and nutrition, and interactions among plants and microorganisms are important for establishment of root microbiomes. As yet, plant-microbe and microbe-microbe interactions in the rhizosphere remain largely mysterious. In this study, rhizosphere fungal community structure was first studied in a field experiment with two soybean cultivars contrasting in nodulation grown in two rhizobium inoculation treatments. Following this, recombinant inbred lines (RILs) contrasting in markers across three QTLs for biological nitrogen fixation (BNF) were evaluated for effects of genotype and rhizobium inoculation to the rhizosphere fungal community as assessed using ITS1 amplicon sequencing. The soybean plants tested herein not only hosted rhizosphere fungal communities that were distinct from bulk soils, but also specifically recruited and enriched Cladosporium from bulk soils. The resulting rhizosphere fungal communities varied among soybean genotypes, as well as, between rhizobium inoculation treatments. Besides, Cladosporium were mostly enriched in the rhizospheres of soybean genotypes carrying two or three favorable BNF QTLs, suggesting a close association between soybean traits associated with nodulation and those affecting the rhizosphere fungal community. This inference was bolstered by the observation that introduction of exogenous rhizobia significantly altered rhizosphere fungal communities to the point that these communities could be distinguished based on the combination of soybean genotype and whether exogenous rhizobia was applied. Interestingly, grouping of host plants by BNF QTLs also distinguished fungal community responses to rhizobium inoculation. Taken together, these results reveal that complex cross-kingdom interactions exist among host plants, symbiotic N-2 fixing bacteria and fungal communities in the soybean rhizosphere.
Keyword ：
fungal community fungal community microbiome microbiome rhizobium inoculation rhizobium inoculation rhizosphere rhizosphere soybean soybean
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| GB/T 7714 | Xu, Hanyu , Yang, Yongqing , Tian, Yingzhe et al. Rhizobium Inoculation Drives the Shifting of Rhizosphere Fungal Community in a Host Genotype Dependent Manner [J]. | FRONTIERS IN MICROBIOLOGY , 2020 , 10 . |
| MLA | Xu, Hanyu et al. "Rhizobium Inoculation Drives the Shifting of Rhizosphere Fungal Community in a Host Genotype Dependent Manner" . | FRONTIERS IN MICROBIOLOGY 10 (2020) . |
| APA | Xu, Hanyu , Yang, Yongqing , Tian, Yingzhe , Xu, Ruineng , Zhong, Yongjia , Liao, Hong . Rhizobium Inoculation Drives the Shifting of Rhizosphere Fungal Community in a Host Genotype Dependent Manner . | FRONTIERS IN MICROBIOLOGY , 2020 , 10 . |
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Seed size is a major determinant of grain yield in soybean, however their genetic basis remains largely unknown. In order to delimit map-based position of a major locus qSS3, we evaluated three mapping populations, including RILs, NILs and a sub-F(2)in three environments for six seed size-related traits. For these traits, the kurtosis and skewness ranged between 0.0 and 1.16, while h(b)(2) ranged from 0.75 to 0.96, indicating that this RIL population is suitable for QTL analysis. QTL analysis identified 12 loci which consist of 30 significant QTLs with PVE% and LOD values of 6.6%-26.2% and 2.50-5.61, respectively. Among them,qSS3was a major and stable locus explaining 7.3%-26.2% of the variation in 5 of the 6 traits, with the respective LOD values falling in the range of 2.72-5.61. Additionally, qSS3 effects were confirmed in NILs and delimited to an interval of similar to 1,126 kb containing 123 annotated genes. Overall, this study may assist efforts aiming to improve soybean seed traits by identifying valuable genetic resources which can be used in future MAS breeding programmes.
Keyword ：
NIL (near isogenic line) NIL (near isogenic line) QTLs (quantitative trait loci) QTLs (quantitative trait loci) RILs (recombinant inbred lines) RILs (recombinant inbred lines) seed trait seed trait soybean soybean
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| GB/T 7714 | Cui, Baofeng , Chen, Lei , Yang, Yongqing et al. Genetic analysis and map-based delimitation of a major locus qSS3 for seed size in soybean [J]. | PLANT BREEDING , 2020 , 139 (6) : 1145-1157 . |
| MLA | Cui, Baofeng et al. "Genetic analysis and map-based delimitation of a major locus qSS3 for seed size in soybean" . | PLANT BREEDING 139 . 6 (2020) : 1145-1157 . |
| APA | Cui, Baofeng , Chen, Lei , Yang, Yongqing , Liao, Hong . Genetic analysis and map-based delimitation of a major locus qSS3 for seed size in soybean . | PLANT BREEDING , 2020 , 139 (6) , 1145-1157 . |
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Beany flavor induced by three lipoxygenases (LOXs, including LOX1, LOX2, and LOX3) restricts human consumption of soybean. It is desirable to generate lipoxygenase-free new mutant lines to improve the eating quality of soybean oil and protein products. In this study, a pooled clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein 9 (Cas9) strategy targeting three GmLox genes (GmLox1, GmLox2, and GmLox3) was applied and 60 T-0 positive transgenic plants were generated, carrying combinations of sgRNAs and mutations. Among them, GmLox-28 and GmLox-60 were gmlox1gmlox2gmlox3 triple mutants and GmLox-40 was a gmlox1gmlox2 double mutant. Sequencing of T-1 mutant plants derived from GmLox-28, GmLox-60, and GmLox-40 showed that mutation in the GmLox gene was inherited by the next generation. Colorimetric assay revealed that plants carrying different combinations of mutations lost the corresponding lipoxygenase activities. Transgene-free mutants were obtained by screening the T-2 generation of lipoxygenase-free mutant lines (GmLox-28 and GmLox-60). These transgene- and lipoxygenase-free mutants could be used for soybean beany flavor reduction without restriction by regulatory frameworks governing transgenic organisms. (C) 2019 Crop Science Society of China and Institute of Crop Science, CAAS. Production and hosting by Elsevier B.V. on behalf of KeAiCommunications Co., Ltd.
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| GB/T 7714 | Wang, Jie , Kuang, Huaqin , Zhang, Zhihui et al. Generation of seed lipoxygenase-free soybean using CRISPR-Cas9 [J]. | CROP JOURNAL , 2020 , 8 (3) : 432-439 . |
| MLA | Wang, Jie et al. "Generation of seed lipoxygenase-free soybean using CRISPR-Cas9" . | CROP JOURNAL 8 . 3 (2020) : 432-439 . |
| APA | Wang, Jie , Kuang, Huaqin , Zhang, Zhihui , Yang, Yongqing , Yan, Long , Zhang, Mengchen et al. Generation of seed lipoxygenase-free soybean using CRISPR-Cas9 . | CROP JOURNAL , 2020 , 8 (3) , 432-439 . |
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