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学者姓名:蒋瑀霁
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Energy fluxes driven by predation are crucial to the relationships between biodiversity and ecosystem functioning in soils. However, there is little empirical evidence connecting these fluxes within soil micro-food webs to soil multifunctionality. Here, we initially used a long-term field experiment to investigate the extent to which nematode predation influences energy fluxes in soil micro-food webs and, in turn, impacts soil multifunctionality. Based on our analysis of body mass-scaled metabolic rates for 70 organismal groups, we estimated that nematodes require roughly three orders of magnitude more energy per individual than bacteria. In the field, we found nematode addition to increase multitrophic diversity and to strengthen interactions between bacteriafeeding nematodes and bacteria. This resulted in multitrophic energy fluxes that were 5.9-169.4 % greater than in soil lacking nematode additions. Specifically, nematode addition reinforced the bacterial energy channel, resulting in greater energy transfer from basal resources to bacteria and subsequently to protists and bacterivorous or omnivorous-predatory nematodes, which altered energy composition and reduced energy flow uniformity. Moreover, our results revealed that elevated multitrophic diversity and shifts in the energetic structure of soil micro-food webs mediated the enhancement in soil multifunctionality. Lastly, a complementary 13C-tracer microcosm experiment validated selective predation by nematodes on bacterial taxa (e.g., Mesorhizobium and Paenibacillus), as shown by significant positive correlations between 13C-labeled bacteria and 13C-enriched nematodes that explain the trophic transfer observed in nematode addition field treatments. Taken together, this study demonstrates that selective predation by nematodes reorganizes energy flow within soil micro-food webs, offering mechanistic evidence that predator-driven shifts in energy flow underpin biodiversity-function relationships in agricultural soils.
Keyword :
Bacterial energy channel Bacterial energy channel Ecosystem function Ecosystem function Energy flux Energy flux Multitrophic diversity Multitrophic diversity Nematode selective predation Nematode selective predation Soil micro-food web Soil micro-food web
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| GB/T 7714 | Zheng, Jie , Peng, Ziyi , Dini-Andreote, Francisco et al. Nematode predation modulates the energetic dynamics of soil micro-food webs with consequences for soil multifunctionality [J]. | SOIL BIOLOGY & BIOCHEMISTRY , 2026 , 212 . |
| MLA | Zheng, Jie et al. "Nematode predation modulates the energetic dynamics of soil micro-food webs with consequences for soil multifunctionality" . | SOIL BIOLOGY & BIOCHEMISTRY 212 (2026) . |
| APA | Zheng, Jie , Peng, Ziyi , Dini-Andreote, Francisco , Barnes, Andrew D. , Shi, Guangping , Potapov, Anton M. et al. Nematode predation modulates the energetic dynamics of soil micro-food webs with consequences for soil multifunctionality . | SOIL BIOLOGY & BIOCHEMISTRY , 2026 , 212 . |
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Introduction: Low-molecular-weight organic acids (LMWOAs) present in root exudates modulate the assembly and function of phosphorus (P)-mobilizing bacteria in the rhizosphere. Nonetheless, relatively little is known about how specific LMWOAs affect the structure of rhizosphere microbes associated with P cycling. Objectives: This study aimed to elucidate the mechanisms by which LMWOAs affect the recruitment of P-mobilizing bacterial communities, with implications for P bioavailability and plant P uptake. Methods: The pqqC and phoD bacterial genes, along with root-derived LMWOAs, were profiled using amplicon sequencing and non-targeted metabolomics. The mechanisms underlying the stimulation of P-mobilizing bacteria for soil P mobilization and plant P uptake were investigated through in vitro and pot experiments, complemented by transcriptomics and proteomics. Results: Field data indicated that manure amendment increased the soil labile-P fraction and P bioavailability. Additionally, it was observed that root-derived aliphatic and aromatic LMWOAs modulated the structure, diversity, and abundance of pqqC and phoD genes, correlating with the expression levels of phosphate transporters and acid phosphatases in maize roots. In vitro and pot experiments validated the effects of 2-hydroxycinnamic, syringic, isoferulic, and alpha-ketoglutaric acids on the keystone bacteria (Burkholderia, Pseudomonas, Mesorhizobium, and Sinorhizobium). These molecules enhanced the diversity and abundance of pqqC and phoD genes, affecting maize root morphology, plant gene expression, and protein synthesis. Conclusion: This study elucidated the intricate interactions between maize root exudates and Pmobilizing bacteria. The results provide new avenues for exploring root-derived LMWOAs as signaling molecules to optimize synthetic biological strategies for sustainable agriculture. (c) 2025 The Authors. Published by Elsevier B.V. on behalf of Cairo University. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
Keyword :
Keystone taxa Keystone taxa Low-molecular-weight organic acids Low-molecular-weight organic acids P bioavailability P bioavailability pqqC and phoD genes pqqC and phoD genes Synthetic community Synthetic community
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| GB/T 7714 | Zheng Jie , Shi Guangping , Dini-Andreote Francisco et al. Root-derived low molecular weight organic acids modulate keystone microbial taxa impacting plant phosphorus acquisition [J]. | JOURNAL OF ADVANCED RESEARCH , 2026 , 81 : 95-109 . |
| MLA | Zheng Jie et al. "Root-derived low molecular weight organic acids modulate keystone microbial taxa impacting plant phosphorus acquisition" . | JOURNAL OF ADVANCED RESEARCH 81 (2026) : 95-109 . |
| APA | Zheng Jie , Shi Guangping , Dini-Andreote Francisco , Yang Yeyuping , Jiang Yuji . Root-derived low molecular weight organic acids modulate keystone microbial taxa impacting plant phosphorus acquisition . | JOURNAL OF ADVANCED RESEARCH , 2026 , 81 , 95-109 . |
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The transformation and stabilization of soil organic carbon (SOC) are important processes of global carbon (C) cycling, with implications for climate change. Much attention has been given to microbial anabolic processes driving SOC accrual. These are referred to as the soil microbial carbon pump (MCP), which emphasizes the contribution of microbial metabolism and necromass to the stable soil C pool. However, we still lack a fundamental understanding of how trophic interactions between soil fauna and microbiota modulate microbial necromass production and, consequently, SOC formation. Here, we provide an ecological perspective on the impacts of trophic interactions on modulating necromass formation and C accrual in soils. We discuss the mechanisms of trophic interactions in the context of food web ecology, with a focus on trophic control of microbial population densities and their influences on soil microbiota assembly. We foresee that integrating trophic interactions into the soil MCP framework can provide a more comprehensive basis for guiding future research efforts to elucidate the mechanisms modulating microbial necromass and SOC formation in terrestrial ecosystems. This perspective offers an ecological foundation for leveraging the use of biological interventions to enhance SOC accrual, providing valuable insights for sustainable C management strategies.
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| GB/T 7714 | Wang, Xiaoyue , Liang, Chao , Dini-Andreote, Francisco et al. Impacts of trophic interactions on carbon accrual in soils [J]. | TRENDS IN MICROBIOLOGY , 2025 , 33 (3) : 277-284 . |
| MLA | Wang, Xiaoyue et al. "Impacts of trophic interactions on carbon accrual in soils" . | TRENDS IN MICROBIOLOGY 33 . 3 (2025) : 277-284 . |
| APA | Wang, Xiaoyue , Liang, Chao , Dini-Andreote, Francisco , Zhou, Shungui , Jiang, Yuji . Impacts of trophic interactions on carbon accrual in soils . | TRENDS IN MICROBIOLOGY , 2025 , 33 (3) , 277-284 . |
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本发明公开了用于红壤中头叶属线虫原位富集的菌群及应用,包括细菌A、细菌B、细菌C、细菌D中的一种或几种;所述细菌A为贪铜菌属Cupriavidus necator,菌株YTR‑C1,所述细菌B为中华根瘤菌属Sinorhizobium sp.,菌株YTR‑S1,所述细菌C为中间根瘤菌Mesorhizobium amorphae,菌株YTR‑M3,所述细菌D为罗尔斯通氏菌属Ralstoniapickettii,菌株YTR‑R242,将上述菌株组合使用,浓度比为(1‑10):(1‑10):(1‑10):(1‑10),可以提升红壤中头叶属线虫的数量,从而促进农作物的生长。
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| GB/T 7714 | 蒋瑀霁 , 朱国繁 , 周顺桂 et al. 用于红壤中头叶属线虫原位富集的菌群及应用 : CN202411847407.8[P]. | 2024-12-16 . |
| MLA | 蒋瑀霁 et al. "用于红壤中头叶属线虫原位富集的菌群及应用" : CN202411847407.8. | 2024-12-16 . |
| APA | 蒋瑀霁 , 朱国繁 , 周顺桂 , 石广萍 , 王晓玥 , 刘佳 . 用于红壤中头叶属线虫原位富集的菌群及应用 : CN202411847407.8. | 2024-12-16 . |
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本发明公开了一种基于土壤食物网的复合生物肥及应用,所述复合生物肥包括原杆属线虫、原生动物和中间根瘤菌,所述原生动物为丝足虫类Neoheteromita,所述中间根瘤菌为Mesorhizobium amorphae,菌株YTR‑M3,于2019年4月9日保藏于中国微生物菌种保藏管理委员会普通微生物中心,保藏号:CGMCC17532。基于该复合生物肥构建相应土壤生物组合物及培养基,可以改良土壤酸性,提高土壤养分,通过田间试验发现,添加这种复合生物肥增加了红壤中有机碳含量,有效磷含量,磷酸酶活性,提高了玉米的产量和质量。
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| GB/T 7714 | 蒋瑀霁 , 朱国繁 , 王晓玥 et al. 一种基于土壤食物网的复合生物肥及应用 : CN202510309268.1[P]. | 2025-03-17 . |
| MLA | 蒋瑀霁 et al. "一种基于土壤食物网的复合生物肥及应用" : CN202510309268.1. | 2025-03-17 . |
| APA | 蒋瑀霁 , 朱国繁 , 王晓玥 , 周顺桂 . 一种基于土壤食物网的复合生物肥及应用 : CN202510309268.1. | 2025-03-17 . |
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本发明公开了一种用于酸性红壤中秸秆降解合成菌剂的方法及应用,包括包括细菌B和放线菌C;所述细菌B为红平红球菌Rhodococcus erythropolis,菌株Straw‑P2F9,于2025年1月20日保藏于中国微生物菌种保藏管理委员会普通微生物中心,保藏号:CGMCC No.33465;所述放线菌C为硝化木质杆菌Paenarthrobacter nitroguajacolicus,菌株Straw‑B50,于2025年1月20日保藏于中国微生物菌种保藏管理委员会普通微生物中心,保藏号:CGMCC No.33463。该合成菌剂提升了酸性红壤中秸秆的降解率,提高了作物的产量和质量。
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| GB/T 7714 | 蒋瑀霁 , 王晓玥 , 朱国繁 et al. 一种用于酸性红壤中秸秆降解合成菌剂的方法及应用 : CN202510267970.6[P]. | 2025-03-07 . |
| MLA | 蒋瑀霁 et al. "一种用于酸性红壤中秸秆降解合成菌剂的方法及应用" : CN202510267970.6. | 2025-03-07 . |
| APA | 蒋瑀霁 , 王晓玥 , 朱国繁 , 祝玲月 , 周顺桂 . 一种用于酸性红壤中秸秆降解合成菌剂的方法及应用 : CN202510267970.6. | 2025-03-07 . |
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Soil nematodes are the most abundant metazoans in terrestrial ecosystems and play a crucial role in maintaining soil ecosystem functions through their energy dynamics. However, the mechanisms by which nematode energy fluxes influence soil organic carbon (SOC) stocks remain poorly understood. This study investigated how nematode food web energy flux responds to different straw return treatments and the effect this has on soil carbon fractions in acidic red soils. The study was based on a 12-year long-term fertilization experiment conducted at the Yingtan National Agro-Ecosystem Observation and Research Station of the Chinese Academy of Sciences. The experiment included four treatments: (1) no fertilizer (CK); (2) NPK chemical fertilizer (N); (3) NPK chemical fertilizer with straw return (NS); and (4) chemical fertilizer with a combined application of straw and pig manure (NSM), with a carbon input ratio of 9:1 for straw to manure. We analyzed nematode community structure and ecological indices, including maturity, enrichment, and structure indices, as well as metabolic footprints and energy fluxes. We also examined the relationships between these factors and different SOC fractions (particulate organic carbon, POC; mineral-associated organic carbon, MAOC; and microbial biomass carbon, MBC). Our results demonstrated that the NS and NSM treatments significantly increased SOC content, with the NSM treatment having the most pronounced effect, increasing SOC by 67% compared to the CK treatment. These improvements were accompanied by substantial changes in nematode communities: total nematode abundance in the NSM treatment increased 3.6-fold relative to the CK treatment, with bacterivorous nematodes (Ba) forming the dominant trophic group (with a relative abundance of 40.5%–50.3%). Notably, the NSM treatment elevated the maturity index (MI), enrichment index (EI), and structure index (SI) of nematode communities, indicating the development of a more mature and stable soil food web. Energy flux analysis revealed that both ‘fast’(bacterivore-dominated) and ‘slow’(omnivore-predator regulated) energy channels were enhanced under straw return treatments. Specifically, the increase in cp-1 taxa bacterivorous nematodes (opportunistic taxa) was strongly associated with elevated bacterial energy flux and subsequent MAOC accumulation, contributing 6.7% to the total variation. In contrast, the energy flux of omnivorous-predatory nematodes (OP) had the greatest influence on POC dynamics, contributing 7.4%. These findings suggest that nematode energy fluxes regulate SOC accumulation through distinct pathways: (1) the ‘fast’ channel, where bacterivorous nematodes promote microbial turnover and necromass formation to facilitate MAOC stabilization; and (2) the ‘slow’ channel, where omnivorous nematodes influence POC through trophic cascades that modulate microbivore and herbivore populations. Furthermore, NSM treatment demonstrated synergistic effects, enhancing total energy flux 10-fold compared to the CK treatment. This study sheds new light on the mechanisms by which nematode-mediated energy fluxes regulate SOC stocks in red soils. The findings emphasize the importance of incorporating soil fauna energy dynamics into carbon cycling models and indicate that the combined application of straw and manure is an effective strategy for improving soil fertility, carbon storage, and crop productivity in subtropical red soil regions. These results have significant implications for the development of sustainable agricultural practices in the context of food security. © 2025 Science Press. All rights reserved.
Keyword :
Abiotic Abiotic Biomass Biomass Biotic Biotic Ecosystems Ecosystems Fertilizers Fertilizers Mammals Mammals Manures Manures Metabolism Metabolism Organic carbon Organic carbon Soils Soils
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| GB/T 7714 | Shi, Guangping , Zheng, Jie , Peng, Ziyi et al. Effects of nematode energy fluxes on soil carbon fractions under combined straw-inorganic fertilizer application [J]. | Chinese Science Bulletin , 2025 , 70 (28-29) : 4891-4901 . |
| MLA | Shi, Guangping et al. "Effects of nematode energy fluxes on soil carbon fractions under combined straw-inorganic fertilizer application" . | Chinese Science Bulletin 70 . 28-29 (2025) : 4891-4901 . |
| APA | Shi, Guangping , Zheng, Jie , Peng, Ziyi , Wang, Xiaoyue , Zhou, Shungui , Liu, Jia et al. Effects of nematode energy fluxes on soil carbon fractions under combined straw-inorganic fertilizer application . | Chinese Science Bulletin , 2025 , 70 (28-29) , 4891-4901 . |
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Whether arbuscular mycorrhizal fungal (AMF) symbionts are more likely to form in low- or high-fertility soils has been debated for decades. The symbiotic efficiency of AMF on plants is determined not only by a trait-based framework, such as root economics space (RES), but also by the environmental adaptability and the assembly processes of AMF communities. However, it remains unknown how RES regulates AMF community assembly and, in turn, affects AMF per cent colonization and plant productivity. We characterized RES based on maize root traits across a long-term soil fertility gradient. In parallel, we explored the assembly processes of AMF generalists and specialists and elucidated how RES regulates AMF percent colonization. Our results indicated that carbon inputs and lime amendments enhanced the RES symbiosis gradient by improving soil fertility. AMF generalists were assembled primarily through stochastic processes, whereas AMF specialists were shaped by deterministic processes. We further revealed the dual mechanisms by which the symbiosis gradient regulated plant productivity. Under low-nutrient conditions, a low symbiosis gradient increased the determinism of AMF specialists, ultimately enhancing plant productivity through increased AMF percent colonization. In contrast, under high-nutrient conditions, a high symbiosis gradient increased stochastic assembly of AMF generalists, thereby enhancing plant productivity. Synthesis. Our research provides new insights into plant-AMF interactions, highlighting their role in optimizing crop productivity and developing sustainable agricultural practices. (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(AMF)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic).AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(RES)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic).(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)RES(sic)(sic)(sic)(sic)AMF(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)(sic)AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic). (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)RES, (sic)(sic)(sic)(sic)AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)RES(sic)AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic). (sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)RES(sic)(sic)(sic)(sic)(sic).AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic).(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic):(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)AMF(sic)(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic);(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic). (sic)(sic):(sic)(sic)(sic)(sic)(sic)(sic)-AMF(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic), (sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic)(sic).
Keyword :
AMF AMF community assembly community assembly generalists generalists plant productivity plant productivity plant-soil (below-ground) interactions plant-soil (below-ground) interactions root economics space root economics space specialists specialists
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| GB/T 7714 | Jin, Lele , Wang, Xiaoyue , Zheng, Jie et al. Deciphering the mycorrhizal nexus: Root economic trade-offs shape arbuscular mycorrhizal fungal assembly dynamics to enhance crop productivity [J]. | JOURNAL OF ECOLOGY , 2025 , 113 (11) : 3225-3237 . |
| MLA | Jin, Lele et al. "Deciphering the mycorrhizal nexus: Root economic trade-offs shape arbuscular mycorrhizal fungal assembly dynamics to enhance crop productivity" . | JOURNAL OF ECOLOGY 113 . 11 (2025) : 3225-3237 . |
| APA | Jin, Lele , Wang, Xiaoyue , Zheng, Jie , Shi, Guangping , Jiang, Yuji . Deciphering the mycorrhizal nexus: Root economic trade-offs shape arbuscular mycorrhizal fungal assembly dynamics to enhance crop productivity . | JOURNAL OF ECOLOGY , 2025 , 113 (11) , 3225-3237 . |
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Trophic interactions between micro-and macro-organisms structure food webs in the plant rhizosphere. These interactions affect the plant-associated microbiota and nutrient dynamics, and influence plant health and performance. In this forum article we discuss the need for, and challenges associated with, targeted manipulation of soil food webs toward the development of multitrophic synthetic communities.
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| GB/T 7714 | Luan, Lu , Dini-Andreote, Francisco , Zhou, Shungui et al. Targeted manipulation of food webs in the plant rhizosphere [J]. | TRENDS IN PLANT SCIENCE , 2025 , 30 (5) : 457-460 . |
| MLA | Luan, Lu et al. "Targeted manipulation of food webs in the plant rhizosphere" . | TRENDS IN PLANT SCIENCE 30 . 5 (2025) : 457-460 . |
| APA | Luan, Lu , Dini-Andreote, Francisco , Zhou, Shungui , Jiang, Yuji . Targeted manipulation of food webs in the plant rhizosphere . | TRENDS IN PLANT SCIENCE , 2025 , 30 (5) , 457-460 . |
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Trait-based approaches are increasingly applied to elucidate the microbial mechanisms that drive nutrient cycling and plant productivity in the rhizosphere. Genomic traits constraining trade-offs among functional traits are emerging as critical dimensions of ecological strategies. Although phenotypic traits have been studied extensively, the ecological relevance of genomic traits in shaping ecological strategies remains unclear. Here, we propose that genome size and guanine-cytosine content constitute core axes that integrate genomic architecture with fungal trade-offs in growth yield, resource acquisition, and stress tolerance. We synthesize current evidence on how genomic traits adapt to environmental gradients and how they influence fungal ecological strategies that modulate plant-fungi interactions. Advancing this conceptual framework promises deeper insight into trait-environment dynamics and plant-microbe interactions across environmental gradients.
Keyword :
ecological strategies ecological strategies fungi fungi genomic traits genomic traits plant–fungi interactions plant–fungi interactions plant productivity plant productivity
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| GB/T 7714 | Chen Li , Dini-Andreote Francisco , Wang Hui et al. Fungal genomic trait-based ecological strategies mediate plant productivity. [J]. | Trends in plant science , 2025 . |
| MLA | Chen Li et al. "Fungal genomic trait-based ecological strategies mediate plant productivity." . | Trends in plant science (2025) . |
| APA | Chen Li , Dini-Andreote Francisco , Wang Hui , Zhou Shungui , Jiang Yuji . Fungal genomic trait-based ecological strategies mediate plant productivity. . | Trends in plant science , 2025 . |
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